Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46114 | Canola | nucleus | 93.36 | 93.36 |
| CDY21728 | Canola | nucleus | 29.46 | 45.22 |
| CDY35992 | Canola | nucleus | 29.05 | 44.59 |
| CDY71713 | Canola | nucleus | 37.76 | 39.57 |
| CDX83880 | Canola | nucleus | 29.88 | 39.56 |
| CDX96475 | Canola | nucleus | 37.34 | 39.47 |
| CDX72988 | Canola | nucleus | 36.93 | 39.38 |
| CDX82074 | Canola | nucleus | 37.34 | 38.63 |
| CDY58312 | Canola | nucleus | 36.93 | 38.03 |
| CDX75353 | Canola | nucleus | 39.42 | 37.85 |
| CDX68977 | Canola | nucleus | 39.0 | 37.6 |
| CDY28302 | Canola | nucleus | 39.0 | 37.45 |
| CDX81853 | Canola | nucleus | 37.34 | 36.44 |
| CDX96742 | Canola | nucleus | 35.27 | 35.12 |
| CDY21727 | Canola | nucleus | 36.1 | 34.66 |
| KRH15916 | Soybean | nucleus | 33.61 | 33.47 |
| CDX83109 | Canola | nucleus | 21.16 | 31.48 |
| CDY44415 | Canola | nucleus | 33.61 | 31.03 |
| CDY30264 | Canola | nucleus | 31.12 | 28.85 |
| CDX78761 | Canola | nucleus | 36.51 | 28.11 |
| CDX70776 | Canola | nucleus | 36.1 | 27.8 |
| CDY67808 | Canola | nucleus | 18.26 | 27.67 |
| CDY20004 | Canola | nucleus | 32.78 | 27.53 |
| CDY66025 | Canola | nucleus | 32.78 | 27.43 |
| CDX85443 | Canola | nucleus | 34.85 | 27.36 |
| CDY02687 | Canola | nucleus | 34.85 | 27.1 |
| CDY69058 | Canola | nucleus | 29.46 | 26.89 |
| CDY40941 | Canola | nucleus | 35.27 | 26.56 |
| CDY16884 | Canola | nucleus | 34.02 | 26.28 |
| CDX95921 | Canola | nucleus | 34.85 | 26.25 |
| CDY07345 | Canola | nucleus | 32.37 | 26.17 |
| CDY67868 | Canola | nucleus | 31.95 | 25.84 |
| CDY38460 | Canola | nucleus | 34.02 | 25.31 |
| CDY66170 | Canola | nucleus | 32.78 | 25.16 |
| CDY50737 | Canola | nucleus | 35.68 | 25.0 |
| CDY12830 | Canola | nucleus | 25.31 | 24.11 |
| CDY46444 | Canola | nucleus | 35.27 | 24.08 |
| CDY44993 | Canola | nucleus | 34.85 | 23.8 |
| CDY01420 | Canola | nucleus | 25.31 | 23.19 |
| CDY30608 | Canola | nucleus | 24.9 | 22.64 |
| CDX72621 | Canola | nucleus | 24.9 | 22.64 |
| CDY29542 | Canola | nucleus | 24.48 | 22.26 |
| CDY22442 | Canola | nucleus | 24.9 | 21.82 |
| CDY57355 | Canola | nucleus | 24.9 | 21.58 |
| CDY23023 | Canola | nucleus | 25.73 | 21.38 |
| CDX89554 | Canola | nucleus | 25.73 | 21.16 |
| CDY02098 | Canola | nucleus | 25.73 | 21.16 |
| CDX75635 | Canola | nucleus | 26.14 | 21.07 |
| CDX69287 | Canola | nucleus | 26.56 | 20.91 |
| CDY38933 | Canola | nucleus | 25.31 | 20.89 |
| CDX74436 | Canola | nucleus | 31.12 | 20.78 |
| CDY44045 | Canola | nucleus | 24.48 | 20.7 |
| CDX73963 | Canola | nucleus | 24.9 | 17.91 |
| CDX68566 | Canola | nucleus | 23.24 | 17.83 |
| CDY07907 | Canola | nucleus | 24.48 | 17.77 |
| CDY20494 | Canola | nucleus | 25.31 | 16.58 |
| CDY43567 | Canola | nucleus | 14.52 | 16.13 |
| CDY27271 | Canola | nucleus | 24.9 | 16.09 |
| CDX72208 | Canola | nucleus | 24.48 | 16.03 |
| CDX74825 | Canola | nucleus | 25.73 | 15.46 |
| CDY70773 | Canola | nucleus | 14.11 | 11.89 |
| CDY70901 | Canola | nucleus | 14.11 | 11.89 |
| CDX83108 | Canola | cytosol | 0.83 | 5.13 |
Protein Annotations
| EnsemblPlants:CDX72405 | EnsemblPlantsGene:GSBRNA2T00099898001 | Gene3D:1.10.10.60 | GO:A0A078C6C9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF941 | PFAM:PF13921 | PFscan:PS51294 | ProteinID:CDX72405 | ProteinID:CDX72405.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE1531 | MapMan:15.5.2.1 | : | : |
Description
BnaC07g44270D
Coordinates
chrLK031796:-:1072750..1073584
Molecular Weight (calculated)
27894.6 Da
IEP (calculated)
9.975
GRAVY (calculated)
-1.062
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRGSNSCDN KKTKGHRKGL WKPFEDDKLK QLVEQYGPQN WNIIGELFSG RTGQSCRQRW CNQLAPNINK GPFTKEEEER LLEAHRIHGN RWAYIAKLFP
101: GRTDNALKNH YHVTMKRRKR IGLSSTPTSP FNQIRSPIFP LPRQSDYLYP FQRYQMHNIR GPWPNTSASA PRSDQFGSSW ISNAQQETDL YWRKSNQMLD
201: HQAATPDHEK NSSGEDGTSM IDHGEKRDVP FFDFLGVGLD S
101: GRTDNALKNH YHVTMKRRKR IGLSSTPTSP FNQIRSPIFP LPRQSDYLYP FQRYQMHNIR GPWPNTSASA PRSDQFGSSW ISNAQQETDL YWRKSNQMLD
201: HQAATPDHEK NSSGEDGTSM IDHGEKRDVP FFDFLGVGLD S
001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
Arabidopsis Description
MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.