Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96475 | Canola | nucleus | 96.46 | 95.61 |
| Bra015992.1-P | Field mustard | nucleus | 96.02 | 95.18 |
| CDY58312 | Canola | nucleus | 88.5 | 85.47 |
| CDX82074 | Canola | nucleus | 88.05 | 85.41 |
| AT1G73410.1 | Thale cress | nucleus | 86.73 | 80.66 |
| CDY21728 | Canola | nucleus | 49.56 | 71.34 |
| CDY35992 | Canola | nucleus | 48.67 | 70.06 |
| CDX83880 | Canola | nucleus | 54.87 | 68.13 |
| CDX81853 | Canola | nucleus | 68.14 | 62.35 |
| CDX96742 | Canola | nucleus | 65.04 | 60.74 |
| CDY21727 | Canola | nucleus | 67.26 | 60.56 |
| VIT_17s0000g01890.t01 | Wine grape | nucleus | 55.31 | 56.56 |
| KRH09502 | Soybean | nucleus | 55.75 | 53.85 |
| GSMUA_Achr9P29090_001 | Banana | nucleus | 50.0 | 53.81 |
| KRH38975 | Soybean | nucleus | 55.31 | 52.74 |
| PGSC0003DMT400079714 | Potato | nucleus | 53.54 | 49.59 |
| EER93554 | Sorghum | nucleus | 49.12 | 46.44 |
| Zm00001d013399_P001 | Maize | nucleus | 48.23 | 45.42 |
| Os03t0720800-01 | Rice | nucleus | 49.12 | 45.31 |
| HORVU4Hr1G008640.1 | Barley | nucleus | 48.23 | 44.86 |
| Zm00001d033815_P001 | Maize | nucleus | 49.12 | 44.76 |
| TraesCS4B01G052400.2 | Wheat | nucleus | 48.23 | 43.78 |
| TraesCS4D01G052600.1 | Wheat | nucleus | 47.79 | 43.2 |
| CDY71713 | Canola | nucleus | 42.92 | 42.17 |
| CDX75353 | Canola | nucleus | 45.13 | 40.64 |
| CDX68977 | Canola | nucleus | 44.69 | 40.4 |
| CDY28302 | Canola | nucleus | 44.25 | 39.84 |
| TraesCS4A01G262500.3 | Wheat | nucleus | 48.23 | 39.49 |
| CDY46114 | Canola | nucleus | 39.82 | 37.34 |
| CDX72405 | Canola | nucleus | 39.38 | 36.93 |
| CDX83109 | Canola | nucleus | 24.34 | 33.95 |
| CDY44415 | Canola | nucleus | 38.94 | 33.72 |
| CDY30264 | Canola | nucleus | 38.05 | 33.08 |
| CDX85443 | Canola | nucleus | 43.81 | 32.25 |
| CDY69058 | Canola | nucleus | 37.61 | 32.2 |
| CDY67808 | Canola | nucleus | 22.57 | 32.08 |
| CDY02687 | Canola | nucleus | 43.36 | 31.61 |
| CDY16884 | Canola | nucleus | 42.92 | 31.09 |
| CDX78761 | Canola | nucleus | 42.48 | 30.67 |
| CDY07345 | Canola | nucleus | 40.27 | 30.54 |
| CDX70776 | Canola | nucleus | 42.04 | 30.35 |
| CDY40941 | Canola | nucleus | 42.92 | 30.31 |
| CDY67868 | Canola | nucleus | 39.82 | 30.2 |
| CDY20004 | Canola | nucleus | 38.05 | 29.97 |
| CDY38460 | Canola | nucleus | 42.92 | 29.94 |
| CDY66025 | Canola | nucleus | 38.05 | 29.86 |
| CDX95921 | Canola | nucleus | 42.04 | 29.69 |
| CDY50737 | Canola | nucleus | 43.36 | 28.49 |
| CDY44993 | Canola | nucleus | 43.36 | 27.76 |
| CDY46444 | Canola | nucleus | 43.36 | 27.76 |
| CDY66170 | Canola | nucleus | 38.5 | 27.71 |
| CDY12830 | Canola | nucleus | 28.76 | 25.69 |
| CDY01420 | Canola | nucleus | 28.76 | 24.71 |
| CDX74436 | Canola | nucleus | 38.5 | 24.1 |
| CDY30608 | Canola | nucleus | 26.99 | 23.02 |
| CDY23023 | Canola | nucleus | 28.76 | 22.41 |
| CDX72621 | Canola | nucleus | 26.11 | 22.26 |
| CDY02098 | Canola | nucleus | 28.76 | 22.18 |
| CDY57355 | Canola | nucleus | 26.99 | 21.94 |
| CDY29542 | Canola | nucleus | 25.66 | 21.89 |
| CDY22442 | Canola | nucleus | 26.11 | 21.45 |
| CDY44045 | Canola | nucleus | 25.66 | 20.35 |
| CDX75635 | Canola | nucleus | 26.55 | 20.07 |
| CDY38933 | Canola | nucleus | 25.66 | 19.86 |
| CDX89554 | Canola | nucleus | 25.66 | 19.8 |
| CDX73963 | Canola | nucleus | 28.76 | 19.4 |
| CDY43567 | Canola | nucleus | 18.58 | 19.35 |
| CDX69287 | Canola | nucleus | 26.11 | 19.28 |
| CDY07907 | Canola | nucleus | 28.32 | 19.28 |
| CDX68566 | Canola | nucleus | 25.22 | 18.15 |
| CDY27271 | Canola | nucleus | 26.99 | 16.35 |
| CDX72208 | Canola | nucleus | 26.55 | 16.3 |
| CDY20494 | Canola | nucleus | 26.55 | 16.3 |
| CDX74825 | Canola | nucleus | 27.43 | 15.46 |
| CDY70901 | Canola | nucleus | 15.49 | 12.24 |
| CDY70773 | Canola | nucleus | 15.49 | 12.24 |
| CDX83108 | Canola | cytosol | 0.44 | 2.56 |
Protein Annotations
| EnsemblPlants:CDX72988 | EnsemblPlantsGene:GSBRNA2T00103420001 | Gene3D:1.10.10.60 | GO:A0A078CDD9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF665 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX72988 | ProteinID:CDX72988.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EC1674 | MapMan:15.5.2.1 | : |
Description
BnaC06g34360D
Coordinates
chrLK031797:+:1519749..1521310
Molecular Weight (calculated)
26186.9 Da
IEP (calculated)
9.435
GRAVY (calculated)
-0.841
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSRGHWRPS EDEKLKDLVE QYGPHNWNAI ALKLPGRSGK SCRLRWFNQL DPRINRNPFT EDEEERLLAA HRIHGNRWSI IARLFPGRTD NAVKNHWHVI
101: MARRTRQTSK PRILPSMTSS LMATEQTMMG SGDGKRILGD VVNYPYQFSH INHLQFLKEF FTGKIALNTK ENQSKKPIEF YDFLQVDTGS NKSEVIDQDS
201: DQSNPNDSDN KNESHVPFFD FLSVGK
101: MARRTRQTSK PRILPSMTSS LMATEQTMMG SGDGKRILGD VVNYPYQFSH INHLQFLKEF FTGKIALNTK ENQSKKPIEF YDFLQVDTGS NKSEVIDQDS
201: DQSNPNDSDN KNESHVPFFD FLSVGK
001: MIMCSRGHWR PAEDEKLKDL VEQYGPHNWN AIALKLPGRS GKSCRLRWFN QLDPRINRNP FTEEEEERLL AAHRIHGNRW SIIARLFPGR TDNAVKNHWH
101: VIMARRTRQT SKPRLLPSTT SSSSLMASEQ IMMSSGGYNH NYSSDDRKKI FPADFINFPY KFSHINHLHF LKEFFTGKIA LNHKANQSKK PMEFYNFLQV
201: NTDSNKSEII DQDSGQSKRS DSDTKHESHV PFFDFLSVGN SAS
101: VIMARRTRQT SKPRLLPSTT SSSSLMASEQ IMMSSGGYNH NYSSDDRKKI FPADFINFPY KFSHINHLHF LKEFFTGKIA LNHKANQSKK PMEFYNFLQV
201: NTDSNKSEII DQDSGQSKRS DSDTKHESHV PFFDFLSVGN SAS
Arabidopsis Description
ATMYB54MYB54 [Source:UniProtKB/TrEMBL;Acc:A0A178WGB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.