Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012910.1-P | Field mustard | nucleus | 98.62 | 97.61 |
| CDY02098 | Canola | nucleus | 97.59 | 96.59 |
| CDY57355 | Canola | nucleus | 79.66 | 83.09 |
| CDY30608 | Canola | nucleus | 73.45 | 80.38 |
| CDX83109 | Canola | nucleus | 43.79 | 78.4 |
| AT3G50060.1 | Thale cress | nucleus | 81.03 | 78.07 |
| CDY12830 | Canola | nucleus | 54.83 | 62.85 |
| CDY01420 | Canola | nucleus | 55.86 | 61.6 |
| CDY43567 | Canola | nucleus | 45.86 | 61.29 |
| CDX68566 | Canola | nucleus | 66.21 | 61.15 |
| CDX83108 | Canola | cytosol | 7.93 | 58.97 |
| KRH61351 | Soybean | nucleus | 46.55 | 52.12 |
| CDY29542 | Canola | nucleus | 47.24 | 51.7 |
| CDY22442 | Canola | nucleus | 48.97 | 51.64 |
| KRH05621 | Soybean | nucleus | 47.59 | 51.49 |
| CDX72621 | Canola | nucleus | 46.9 | 51.32 |
| KRH15420 | Soybean | nucleus | 47.93 | 50.92 |
| CDY44045 | Canola | nucleus | 49.66 | 50.53 |
| CDY38933 | Canola | nucleus | 50.34 | 50.0 |
| CDX89554 | Canola | nucleus | 50.0 | 49.49 |
| GSMUA_Achr4P20150_001 | Banana | nucleus | 45.52 | 49.07 |
| CDX75635 | Canola | nucleus | 50.0 | 48.49 |
| CDX69287 | Canola | nucleus | 50.34 | 47.71 |
| GSMUA_Achr3P13070_001 | Banana | nucleus | 46.55 | 46.55 |
| GSMUA_Achr9P22600_001 | Banana | nucleus | 45.52 | 45.83 |
| GSMUA_Achr1P26140_001 | Banana | nucleus | 44.48 | 45.74 |
| Zm00001d005300_P001 | Maize | nucleus | 44.83 | 45.61 |
| Os09t0106700-01 | Rice | nucleus | 47.93 | 43.57 |
| VIT_03s0180g00210.t01 | Wine grape | nucleus | 45.17 | 43.23 |
| GSMUA_Achr4P12950_001 | Banana | nucleus | 39.66 | 43.23 |
| GSMUA_Achr3P28230_001 | Banana | nucleus | 42.76 | 43.06 |
| GSMUA_Achr4P09450_001 | Banana | nucleus | 44.83 | 43.05 |
| GSMUA_Achr1P09750_001 | Banana | nucleus | 43.79 | 42.76 |
| TraesCS5B01G157300.1 | Wheat | nucleus | 48.97 | 42.39 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 48.28 | 41.67 |
| GSMUA_Achr8P25220_001 | Banana | nucleus | 42.07 | 41.22 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 48.62 | 41.11 |
| Zm00001d019712_P001 | Maize | nucleus | 48.28 | 40.58 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.31 | 40.28 |
| EER98550 | Sorghum | nucleus | 48.62 | 38.52 |
| CDY21728 | Canola | nucleus | 18.97 | 35.03 |
| CDY35992 | Canola | nucleus | 18.28 | 33.76 |
| HORVU5Hr1G049880.1 | Barley | plastid | 47.24 | 32.31 |
| CDX83880 | Canola | nucleus | 18.97 | 30.22 |
| CDX72988 | Canola | nucleus | 22.41 | 28.76 |
| CDX96475 | Canola | nucleus | 22.41 | 28.51 |
| CDY71713 | Canola | nucleus | 22.41 | 28.26 |
| CDY58312 | Canola | nucleus | 22.76 | 28.21 |
| CDX82074 | Canola | nucleus | 22.07 | 27.47 |
| CDX73963 | Canola | nucleus | 30.34 | 26.27 |
| CDY07907 | Canola | nucleus | 30.0 | 26.2 |
| CDY46114 | Canola | nucleus | 21.38 | 25.73 |
| CDX72405 | Canola | nucleus | 21.38 | 25.73 |
| CDY44415 | Canola | nucleus | 23.1 | 25.67 |
| CDX68977 | Canola | nucleus | 22.07 | 25.6 |
| CDX75353 | Canola | nucleus | 22.07 | 25.5 |
| CDY28302 | Canola | nucleus | 22.07 | 25.5 |
| CDX81853 | Canola | nucleus | 20.69 | 24.29 |
| CDX72208 | Canola | nucleus | 30.69 | 24.18 |
| CDY27271 | Canola | nucleus | 31.03 | 24.13 |
| CDX96742 | Canola | nucleus | 20.0 | 23.97 |
| CDY30264 | Canola | nucleus | 21.03 | 23.46 |
| CDY20494 | Canola | nucleus | 29.66 | 23.37 |
| CDY21727 | Canola | nucleus | 20.0 | 23.11 |
| CDY07345 | Canola | nucleus | 23.45 | 22.82 |
| CDY20004 | Canola | nucleus | 22.41 | 22.65 |
| CDY66025 | Canola | nucleus | 22.41 | 22.57 |
| CDY67868 | Canola | nucleus | 23.1 | 22.48 |
| CDX95921 | Canola | nucleus | 24.14 | 21.88 |
| CDX74825 | Canola | nucleus | 29.66 | 21.45 |
| CDY67808 | Canola | nucleus | 11.72 | 21.38 |
| CDY40941 | Canola | nucleus | 23.45 | 21.25 |
| CDY69058 | Canola | nucleus | 19.31 | 21.21 |
| CDY16884 | Canola | nucleus | 22.41 | 20.83 |
| CDY66170 | Canola | nucleus | 22.41 | 20.7 |
| CDY38460 | Canola | nucleus | 22.76 | 20.37 |
| CDY02687 | Canola | nucleus | 21.72 | 20.32 |
| CDX85443 | Canola | nucleus | 21.38 | 20.2 |
| CDX78761 | Canola | nucleus | 21.03 | 19.49 |
| CDX70776 | Canola | nucleus | 21.03 | 19.49 |
| CDY70901 | Canola | nucleus | 18.97 | 19.23 |
| CDY70773 | Canola | nucleus | 18.97 | 19.23 |
| CDY50737 | Canola | nucleus | 22.41 | 18.9 |
| CDY44993 | Canola | nucleus | 22.41 | 18.41 |
| CDY46444 | Canola | nucleus | 22.41 | 18.41 |
| CDX74436 | Canola | nucleus | 21.03 | 16.9 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078GEJ4 | UniProt:A0A078GEJ4 | EnsemblPlants:CDY23023 | ProteinID:CDY23023 |
| ProteinID:CDY23023.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00021480001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF691 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE1389 | SEG:seg |
Description
BnaC07g31640DBnaC07g31640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEJ4]
Coordinates
chrLK032139:+:149953..150951
Molecular Weight (calculated)
32034.6 Da
IEP (calculated)
5.155
GRAVY (calculated)
-0.613
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MADRVKGPWS EEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIL SARAKFGNRW ATIARLLNGR TDNAVKNHWN
101: STLKRKFVGG GGDCDLVAVT AEEDRRKKRR SVSSESAPLV DTGLYMSPES PTGVSDSSTI PSPVAAQLFK PMPVSGGFTV PSPVEMSSSE EDPATSLSLS
201: LSLPGADVSQ ESRNNSLLFP RFESQMEINV EESEEGRRGE FMRVVQEMIK AEVRSYMSEI QINSGGFVVG GLYETGNGGF RDSGFITKVE
101: STLKRKFVGG GGDCDLVAVT AEEDRRKKRR SVSSESAPLV DTGLYMSPES PTGVSDSSTI PSPVAAQLFK PMPVSGGFTV PSPVEMSSSE EDPATSLSLS
201: LSLPGADVSQ ESRNNSLLFP RFESQMEINV EESEEGRRGE FMRVVQEMIK AEVRSYMSEI QINSGGFVVG GLYETGNGGF RDSGFITKVE
001: MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV TARAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E
Arabidopsis Description
MYB77Transcription factor MYB77 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN12]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.