Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82428 | Canola | cytosol, nucleus, plastid | 96.91 | 96.91 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 93.3 | 91.88 |
| AT3G15540.1 | Thale cress | nucleus | 92.78 | 91.37 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 92.27 | 90.86 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 76.8 | 86.13 |
| KRH47514 | Soybean | nucleus | 60.82 | 63.1 |
| KRH09813 | Soybean | nucleus | 59.79 | 62.03 |
| CDY26042 | Canola | nucleus | 61.34 | 60.71 |
| KRH44390 | Soybean | nucleus | 60.82 | 60.51 |
| KRH23504 | Soybean | nucleus | 58.25 | 59.79 |
| CDY68807 | Canola | nucleus | 60.31 | 59.69 |
| CDY53305 | Canola | cytosol | 46.39 | 57.32 |
| VIT_09s0002g05150.t01 | Wine grape | cytosol, nucleus, plastid | 56.19 | 56.77 |
| PGSC0003DMT400006800 | Potato | mitochondrion | 55.15 | 54.87 |
| Solyc03g120380.2.1 | Tomato | nucleus | 53.61 | 54.17 |
| PGSC0003DMT400042572 | Potato | nucleus | 29.9 | 53.7 |
| CDY53800 | Canola | nucleus | 51.03 | 52.66 |
| CDX92972 | Canola | nucleus | 43.3 | 49.12 |
| CDY40837 | Canola | nucleus | 43.3 | 49.12 |
| CDY35493 | Canola | nucleus | 43.3 | 49.12 |
| CDX94876 | Canola | nucleus | 42.78 | 48.54 |
| CDY10692 | Canola | nucleus | 42.78 | 48.26 |
| CDY10346 | Canola | nucleus | 42.27 | 47.67 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 42.78 | 46.11 |
| CDY10069 | Canola | nucleus | 43.3 | 45.65 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 43.3 | 45.16 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 44.33 | 45.03 |
| CDY36883 | Canola | nucleus | 39.69 | 44.77 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 43.81 | 44.5 |
| CDY53735 | Canola | nucleus | 39.18 | 44.19 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 42.27 | 44.09 |
| CDY10694 | Canola | mitochondrion | 37.63 | 41.95 |
| CDY18214 | Canola | nucleus | 47.42 | 41.07 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 48.45 | 40.69 |
| CDX89832 | Canola | nucleus | 46.91 | 40.62 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 48.45 | 39.83 |
| CDY32537 | Canola | nucleus | 46.39 | 39.47 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 45.88 | 39.04 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 45.88 | 38.86 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 46.39 | 38.63 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 46.91 | 38.4 |
| CDY40881 | Canola | cytosol | 36.08 | 38.25 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 46.39 | 37.97 |
| CDY47148 | Canola | nucleus | 45.36 | 37.77 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 45.36 | 36.67 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 45.36 | 36.67 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 45.88 | 36.18 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 31.96 | 34.25 |
| CDY06836 | Canola | nucleus | 43.3 | 33.33 |
| CDY50750 | Canola | nucleus, plastid | 48.97 | 32.65 |
| CDY25617 | Canola | nucleus | 43.3 | 31.58 |
| CDX89499 | Canola | nucleus | 42.78 | 30.63 |
| CDY37837 | Canola | mitochondrion | 43.81 | 28.72 |
| CDY68170 | Canola | nucleus, plastid | 45.88 | 28.62 |
| CDY18679 | Canola | plastid | 45.88 | 28.53 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 44.33 | 26.14 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 37.11 | 26.09 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 44.33 | 25.9 |
| CDY63072 | Canola | nucleus | 45.88 | 22.36 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078CID4 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlants:CDX75834 |
| ProteinID:CDX75834 | ProteinID:CDX75834.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00123798001 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF87 | SUPFAM:SSF54277 | UniParc:UPI0004EEAD3E | SEG:seg | : |
Description
BnaC03g39170D
Coordinates
chrLK031805:+:1016344..1017838
Molecular Weight (calculated)
21104.3 Da
IEP (calculated)
5.107
GRAVY (calculated)
-0.328
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKDGLGLEI TELRLGLPGT EKMMKKRGFT EMIMASSGSN SDQCESGVVS SGGDVGKVSE SPVAKSQVVG WPPVCSYRRK NSCKEVSTTK VGLGYVKVSM
101: DGVPYLRKMD LGSSQGYDDL AFALDKLFGF HGIGVALKDG DNCEYVTIYE DKDGDWMLAG DVPWGMFIES CKRLRIMKRS DATGFGLQPR GVDE
101: DGVPYLRKMD LGSSQGYDDL AFALDKLFGF HGIGVALKDG DNCEYVTIYE DKDGDWMLAG DVPWGMFIES CKRLRIMKRS DATGFGLQPR GVDE
001: MEKEGLGLEI TELRLGLPGR DVAEKMMKKR AFTEMNMTSS GSNSDQCESG VVSSGGDAEK VNDSPAAKSQ VVGWPPVCSY RKKNSCKEAS TTKVGLGYVK
101: VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFRGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF LESCKRLRIM KRSDATGFGL QPRGVDE
101: VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFRGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF LESCKRLRIM KRSDATGFGL QPRGVDE
Arabidopsis Description
IAA19Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.