Factsheet for VIT_09s0002g05150.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g04070.t01
VIT_02s0025g01740.t01
VIT_03s0180g00210.t01
VIT_04s0079g00200.t01
VIT_05s0020g04680.t01
VIT_05s0020g04690.t01
VIT_06s0004g03130.t01
VIT_09s0002g03410.t01
VIT_09s0002g05150.t01
VIT_11s0016g00640.t01
VIT_11s0016g03540.t01
VIT_12s0035g01800.t01
VIT_18s0001g13930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52830.1	VIT_05s0020g04690.t01	AT1G04250.1	21734647
AT1G52830.1	VIT_01s0011g04070.t01	AT1G15050.1	21734647
AT1G52830.1	VIT_18s0001g13930.t01	AT1G19850.1	14729917
AT1G52830.1	VIT_18s0001g13930.t01	AT1G19850.1	22096563
AT1G52830.1	VIT_09s0002g05150.t01	AT1G52830.1	14729917
AT1G52830.1	VIT_05s0020g04680.t01	AT4G14560.1	21798944
AT1G52830.1	VIT_02s0025g01740.t01	AT4G23980.1	22096563
AT1G52830.1	VIT_11s0016g03540.t01	AT4G29080.1	21798944
AT1G52830.1	VIT_11s0016g00640.t01	AT5G20730.1	14729917
AT1G52830.1	VIT_04s0079g00200.t01	AT5G37020.1	14729917
AT3G15540.1	VIT_11s0016g00640.t01	AT1G19220.1	21734647
AT3G15540.1	VIT_18s0001g13930.t01	AT1G19850.1	14729917
AT3G15540.1	VIT_18s0001g13930.t01	AT1G19850.1	21734647
AT3G15540.1	VIT_18s0001g13930.t01	AT1G19850.1	22096563
AT3G15540.1	VIT_09s0002g03410.t01	AT1G51950.1	21798944
AT3G15540.1	VIT_12s0035g01800.t01	AT1G59750.1	22096563
AT3G15540.1	VIT_09s0002g05150.t01	AT3G15540.1	14729917
AT3G15540.1	VIT_09s0002g03410.t01	AT3G16500.1	21734647
AT3G15540.1	VIT_05s0020g04690.t01	AT3G23050.1	21798944
AT3G15540.1	VIT_03s0180g00210.t01	AT3G50060.1	17675404
AT3G15540.1	VIT_05s0020g04680.t01	AT4G14560.1	21798944
AT3G15540.1	VIT_05s0020g04680.t01	AT4G14560.1	9342315
AT3G15540.1	VIT_02s0025g01740.t01	AT4G23980.1	22096563
AT3G15540.1	VIT_11s0016g00640.t01	AT5G20730.1	14729917
AT3G15540.1	VIT_04s0079g00200.t01	AT5G37020.1	14729917
AT3G15540.1	VIT_06s0004g03130.t01	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23504	Soybean	nucleus	64.06	65.08
KRH47514	Soybean	nucleus	63.02	64.71
KRH09813	Soybean	nucleus	63.02	64.71
KRH44390	Soybean	nucleus	65.1	64.1
PGSC0003DMT400042572	Potato	nucleus	34.9	62.04
Solyc03g120380.2.1	Tomato	nucleus	61.98	61.98
PGSC0003DMT400006800	Potato	mitochondrion	62.5	61.54
CDX75834	Canola	cytosol, nucleus, plastid	56.77	56.19
CDX82428	Canola	cytosol, nucleus, plastid	56.25	55.67
Bra001598.1-P	Field mustard	nucleus	55.73	55.15
Bra021117.1-P	Field mustard	cytosol, nucleus, plastid	56.25	54.82
CDY20135	Canola	cytosol, nucleus, plastid	56.25	54.82
CDY21845	Canola	cytosol, extracellular, nucleus	56.25	54.82
AT1G52830.1	Thale cress	nucleus	53.65	54.5
AT3G15540.1	Thale cress	nucleus	55.73	54.31
CDY26042	Canola	nucleus	55.21	54.08
Bra027232.1-P	Field mustard	nucleus	54.17	53.61
CDY71748	Canola	cytosol, nucleus, plastid	47.4	52.6
CDY68807	Canola	nucleus	53.65	52.55
Bra018993.1-P	Field mustard	nucleus	53.65	50.74
VIT_07s0141g00270.t01	Wine grape	nucleus	46.35	47.85
CDY53800	Canola	nucleus	45.31	46.28
VIT_14s0030g02310.t01	Wine grape	nucleus	46.88	45.23
VIT_05s0020g04680.t01	Wine grape	nucleus	39.06	44.64
VIT_14s0081g00010.t01	Wine grape	nucleus, plastid	36.46	41.18
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	42.71	37.96
VIT_07s0141g00290.t01	Wine grape	cytosol, nucleus, plastid	44.27	35.71
VIT_05s0020g04690.t01	Wine grape	cytosol, nucleus, plastid	44.27	34.98
VIT_09s0002g04080.t01	Wine grape	nucleus	47.92	28.75
VIT_11s0016g03540.t01	Wine grape	nucleus	47.92	28.75
VIT_09s0002g05160.t01	Wine grape	nucleus	39.58	25.85
VIT_18s0001g08090.t01	Wine grape	cytosol, nucleus, vacuole	44.79	20.98

Protein Annotations

EntrezGene:100854934	wikigene:100854934	Gene3D:3.10.20.90	MapMan:35.1	ProteinID:ADR80322	ProteinID:ADR80322.1
EMBL:AM470589	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	ProteinID:CAN70530	ProteinID:CAN70530.1	ProteinID:CCB59513
ProteinID:CCB59513.1	UniProt:E5L881	EMBL:FN596494	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EMBL:HQ337790	InterPro:IPR000270	EntrezGene:LOC100854934
wikigene:LOC100854934	RefSeq:NP_001268086.1	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734
PANTHER:PTHR31734:SF12	SUPFAM:SSF54277	TIGR:TC53887	TIGR:TC60829	UniParc:UPI0001F3D857	ArrayExpress:VIT_09s0002g05150
EnsemblPlantsGene:VIT_09s0002g05150	EnsemblPlants:VIT_09s0002g05150.t01	unigene:Vvi.8142	:	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:E5L881]

Coordinates

chr9:+:4851013..4853138

Molecular Weight (calculated)

21752.9 Da

IEP (calculated)

6.775

GRAVY (calculated)

-0.575

Length

192 amino acids

Sequence
(BLAST)

001: MALGLEITEL RLGLPGHADS NHLAGVNAVE RNEKKRVFSE MSGDSSATTC ERKAQNKNQV VGWPPVCSYR RKNSFNDKDR TEATKMYVKV SMDGAPFLRK
101: IDLSSHQGYF NLVTAFEELF GCFGIGEALK DADSSEYIPI YEDKDGDWML VGDVPWEMFI ESCKRLRIKK KSETKNFGLQ LNSLKELQKI ND

Best Arabidopsis Sequence Match ( AT3G15540.1 )
(BLAST)

001: MEKEGLGLEI TELRLGLPGR DVAEKMMKKR AFTEMNMTSS GSNSDQCESG VVSSGGDAEK VNDSPAAKSQ VVGWPPVCSY RKKNSCKEAS TTKVGLGYVK
101: VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFRGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF LESCKRLRIM KRSDATGFGL QPRGVDE

Arabidopsis Description

IAA19Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.