Factsheet for VIT_14s0030g02310.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0141g00270.t01	Wine grape	nucleus	65.83	70.43
VIT_05s0020g04680.t01	Wine grape	nucleus	58.79	69.64
PGSC0003DMT400049677	Potato	nucleus	63.32	68.85
Solyc09g065850.2.1	Tomato	nucleus	63.32	68.11
PGSC0003DMT400051896	Potato	plastid	50.75	66.01
Solyc06g084070.2.1	Tomato	nucleus, plastid	51.26	65.38
GSMUA_Achr9P10690_001	Banana	cytosol, mitochondrion, nucleus	43.72	63.97
GSMUA_Achr5P03110_001	Banana	nucleus	52.26	61.9
GSMUA_Achr4P22530_001	Banana	nucleus	56.28	61.88
GSMUA_Achr4P05200_001	Banana	mitochondrion	37.69	60.0
GSMUA_Achr8P20620_001	Banana	nucleus	54.77	57.98
PGSC0003DMT400013662	Potato	cytosol	55.28	57.89
GSMUA_Achr9P24330_001	Banana	nucleus	49.25	57.31
GSMUA_Achr4P21030_001	Banana	nucleus	56.78	57.07
Solyc06g008580.2.1	Tomato	nucleus	53.77	56.32
GSMUA_Achr2P12630_001	Banana	nucleus	55.78	54.68
GSMUA_Achr11P...	Banana	nucleus	47.24	54.02
EER98076	Sorghum	cytosol, mitochondrion, nucleus	52.26	52.26
TraesCS5B01G446100.1	Wheat	cytosol, mitochondrion, nucleus	46.23	51.98
Os12t0601400-01	Rice	nucleus	51.26	51.78
TraesCS5D01G069200.1	Wheat	cytosol	55.28	51.4
TraesCS5A01G058700.1	Wheat	cytosol	55.28	51.4
TraesCS5B01G058800.1	Wheat	cytosol	55.28	51.4
Zm00001d018973_P001	Maize	nucleus	51.76	50.99
TraesCS5D01G449400.1	Wheat	nucleus	46.23	50.83
VIT_14s0081g00010.t01	Wine grape	nucleus, plastid	42.21	49.41
Zm00001d013071_P001	Maize	nucleus	43.72	48.07
TraesCS5D01G388200.1	Wheat	nucleus	51.26	47.44
VIT_09s0002g05150.t01	Wine grape	cytosol, nucleus, plastid	45.23	46.88
EER90734	Sorghum	cytosol, nucleus, plastid	43.72	46.77
TraesCS5B01G381800.1	Wheat	nucleus	49.75	46.7
Zm00001d041418_P001	Maize	nucleus	53.77	46.52
EER93778	Sorghum	cytosol, nucleus, plastid	52.26	46.02
Zm00001d013707_P001	Maize	nucleus	51.26	45.54
TraesCS5A01G378200.1	Wheat	nucleus	48.24	45.28
Os03t0797800-01	Rice	nucleus	44.72	45.18
Zm00001d033319_P001	Maize	nucleus	51.26	45.13
Os03t0633800-01	Rice	nucleus	50.25	44.25
EES16315	Sorghum	cytosol	53.77	43.85
Zm00001d030993_P001	Maize	nucleus	43.22	43.22
Os07t0182400-01	Rice	plastid	46.23	42.01
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	45.23	41.67
VIT_07s0141g00290.t01	Wine grape	cytosol, nucleus, plastid	49.75	41.6
VIT_05s0020g04690.t01	Wine grape	cytosol, nucleus, plastid	50.25	41.15
HORVU5Hr1G106350.2	Barley	plastid	46.23	40.89
HORVU5Hr1G014290.1	Barley	mitochondrion	47.24	36.72
VIT_11s0016g03540.t01	Wine grape	nucleus	53.77	33.44
VIT_09s0002g04080.t01	Wine grape	nucleus	53.77	33.44
HORVU5Hr1G093640.1	Barley	mitochondrion	52.26	33.12
VIT_09s0002g05160.t01	Wine grape	nucleus	42.21	28.57
Zm00001d034463_P001	Maize	extracellular, golgi	43.72	27.19
VIT_18s0001g08090.t01	Wine grape	cytosol, nucleus, vacuole	52.26	25.37

Protein Annotations

EntrezGene:100262403	wikigene:100262403	Gene3D:3.10.20.90	MapMan:35.1	EMBL:AM451193	InterPro:AUX/IAA_dom
InterPro:AUX_IAA	ProteinID:CAN74317	ProteinID:CAN74317.1	ProteinID:CBI34154	ProteinID:CBI34154.3	UniProt:D7TUH9
EMBL:FN596249	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	EntrezGene:LOC100262403	wikigene:LOC100262403	InterPro:PB1_dom	PFAM:PF02309
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF85	SUPFAM:SSF54277	TIGR:TC64438	UniParc:UPI00015CBB2C
ArrayExpress:VIT_14s0030g02310	EnsemblPlantsGene:VIT_14s0030g02310	EnsemblPlants:VIT_14s0030g02310.t01	unigene:Vvi.6424	RefSeq:XP_002279955	RefSeq:XP_002279955.1
SEG:seg	:	:	:	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:D7TUH9]

Coordinates

chr14:-:7536347..7537679

Molecular Weight (calculated)

22416.7 Da

IEP (calculated)

8.717

GRAVY (calculated)

-0.816

Length

199 amino acids

Sequence
(BLAST)

001: MENKVIYEKD LNLEATELRL GLPGTKKPEK QAPPSLKTSN KRALPDMNEE SGSGNNSSVS DDGKSHRETA PAPKAQVVGW PPVRSYRKSC FQPKKTEAEE
101: GRTYLKVSMD GAPYLRKIDL KVYKGYPELL KALEEMFKFS VGQYSEREGY NGSEYAPTYE DKDGDWMLVG DVPWNMFISS CKRLRIMKGS EARGLGCFL

Best Arabidopsis Sequence Match ( AT5G43700.1 )
(BLAST)

001: MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL

Arabidopsis Description

IAA4Auxin-responsive protein IAA4 [Source:UniProtKB/Swiss-Prot;Acc:P33077]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.