Factsheet for VIT_09s0002g04080.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	64.69	74.46
GSMUA_Achr2P15340_001	Banana	nucleus	55.31	72.24
VIT_11s0016g03540.t01	Wine grape	nucleus	70.62	70.62
GSMUA_Achr10P...	Banana	nucleus	60.62	69.78
PGSC0003DMT400006548	Potato	plastid	56.88	69.73
KRH23426	Soybean	nucleus	66.56	69.38
VIT_14s0081g00010.t01	Wine grape	nucleus, plastid	36.56	68.82
GSMUA_Achr10P...	Banana	nucleus	62.5	68.49
Solyc03g120500.2.1	Tomato	nucleus	59.38	68.35
KRH09902	Soybean	nucleus	68.12	68.34
GSMUA_Achr9P06290_001	Banana	nucleus	58.12	67.88
GSMUA_Achr3P03400_001	Banana	nucleus	65.31	66.99
GSMUA_Achr7P10930_001	Banana	nucleus	54.69	65.54
GSMUA_Achr6P26730_001	Banana	nucleus	56.56	64.87
KRH44313	Soybean	nucleus	64.38	63.98
KRH47242	Soybean	nucleus	62.81	63.01
GSMUA_Achr2P09210_001	Banana	nucleus	47.81	61.69
TraesCS7A01G331100.1	Wheat	nucleus	45.94	61.25
Zm00001d037774_P001	Maize	cytosol	46.56	61.07
OQU77659	Sorghum	nucleus	47.5	61.04
TraesCS7D01G339300.1	Wheat	nucleus	45.62	60.83
Os05t0230700-01	Rice	nucleus	48.44	60.31
EER89802	Sorghum	cytosol	46.56	59.84
TraesCS7B01G242800.1	Wheat	nucleus	45.62	59.84
Os06t0335500-01	Rice	nucleus	49.69	59.77
VIT_05s0020g04690.t01	Wine grape	cytosol, nucleus, plastid	44.38	58.44
HORVU3Hr1G031460.1	Barley	cytosol	41.88	58.26
VIT_07s0141g00290.t01	Wine grape	cytosol, nucleus, plastid	43.12	57.98
TraesCS3D01G162700.1	Wheat	cytosol	41.88	56.54
Os01t0231000-01	Rice	nucleus	46.25	56.27
VIT_05s0020g04680.t01	Wine grape	nucleus	29.38	55.95
TraesCS3A01G155200.1	Wheat	cytosol	42.5	55.51
TraesCS3B01G181500.1	Wheat	cytosol	42.5	55.51
VIT_07s0141g00270.t01	Wine grape	nucleus	32.19	55.38
VIT_14s0030g02310.t01	Wine grape	nucleus	33.44	53.77
HORVU0Hr1G021630.1	Barley	cytosol, mitochondrion, nucleus	30.62	53.26
TraesCS1B01G418400.1	Wheat	nucleus	38.44	50.2
TraesCS3B01G303900.1	Wheat	nucleus, plastid	40.0	50.0
TraesCS1A01G390200.1	Wheat	plastid	40.62	49.81
Os05t0559400-01	Rice	nucleus	43.44	49.47
TraesCS3A01G270000.1	Wheat	nucleus, plastid	40.31	49.43
TraesCS3D01G269700.1	Wheat	nucleus, plastid	40.0	49.42
Os01t0675700-01	Rice	nucleus	41.56	49.08
TraesCS1D01G398400.1	Wheat	nucleus	40.31	48.86
Zm00001d043878_P001	Maize	nucleus, plastid	40.94	48.7
KXG33104	Sorghum	nucleus, plastid	41.56	48.01
VIT_09s0002g05150.t01	Wine grape	cytosol, nucleus, plastid	28.75	47.92
HORVU3Hr1G062160.2	Barley	nucleus, plastid	38.75	47.69
Zm00001d009532_P001	Maize	nucleus	41.56	47.33
KXG22521	Sorghum	nucleus	41.25	47.31
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	31.88	47.22
Zm00001d038980_P001	Maize	cytosol, nucleus, plastid	41.25	45.67
VIT_18s0001g08090.t01	Wine grape	cytosol, nucleus, vacuole	55.31	43.17
Zm00001d010411_P001	Maize	cytosol, endoplasmic reticulum, nucleus	43.44	42.25
HORVU1Hr1G086070.6	Barley	plastid	38.75	39.62
Zm00001d011588_P003	Maize	nucleus, plastid	40.0	37.54
HORVU3Hr1G088810.1	Barley	plastid	27.5	37.13
VIT_09s0002g05160.t01	Wine grape	nucleus	33.44	36.39
Zm00001d024008_P001	Maize	mitochondrion	28.12	25.86

Protein Annotations

EntrezGene:100253148	wikigene:100253148	Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
ProteinID:CCB59457	ProteinID:CCB59457.1	UniProt:F6HYD4	EMBL:FN596494	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	EntrezGene:LOC100253148
wikigene:LOC100253148	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF39
SUPFAM:SSF54277	TIGR:TC68112	UniParc:UPI000210A4D8	ArrayExpress:VIT_09s0002g04080	EnsemblPlantsGene:VIT_09s0002g04080	EnsemblPlants:VIT_09s0002g04080.t01
RefSeq:XP_002284282	RefSeq:XP_002284282.1	RefSeq:XP_003632858	RefSeq:XP_003632858.1	SEG:seg	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F6HYD4]

Coordinates

chr9:-:3749950..3753753

Molecular Weight (calculated)

34377.9 Da

IEP (calculated)

6.998

GRAVY (calculated)

-0.452

Length

320 amino acids

Sequence
(BLAST)

001: MSIPLEHDYI GLSEAPSMER ASDKISSASS STISSESEKS TALNLRETEL RLGLPGSESP ERKPQLGVSL FGKDLEDKTN GYSLGSLKGF VSGAKRGFSD
101: AIDGSGKWVF SVNGGSEVDL GKGAKSCMPG PAMKDVAAPS SPKPVQEKKP QASAANEHAS APAAKAQVVG WPPIRSFRKN TMASSAKNNE DAEGKSGLGC
201: LYVKVSMDGA PYLRKVDLKI YCNYMELSSA LEKMFSCFTI GQCGSHGLPG RDGLTESHLM DLLHGSEYVL TYEDKDGDWM LVGDVPWEMF TESCKRLRIM
301: KGSEAIGLAP RAMEKCKNRN

Best Arabidopsis Sequence Match ( AT4G29080.1 )
(BLAST)

001: MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN

Arabidopsis Description

IAA27Auxin-responsive protein IAA27 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSY8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.