Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77659 | Sorghum | nucleus | 84.44 | 87.15 |
| Zm00001d037774_P001 | Maize | cytosol | 82.49 | 86.89 |
| Os01t0231000-01 | Rice | nucleus | 82.1 | 80.23 |
| Zm00001d010411_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 77.04 | 60.18 |
| Os06t0335500-01 | Rice | nucleus | 62.26 | 60.15 |
| GSMUA_Achr10P... | Banana | nucleus | 63.42 | 58.63 |
| GSMUA_Achr7P10930_001 | Banana | nucleus | 59.14 | 56.93 |
| GSMUA_Achr9P06290_001 | Banana | nucleus | 59.92 | 56.2 |
| GSMUA_Achr6P26730_001 | Banana | nucleus | 59.14 | 54.48 |
| GSMUA_Achr2P09210_001 | Banana | nucleus | 51.75 | 53.63 |
| Solyc03g120500.2.1 | Tomato | nucleus | 55.25 | 51.08 |
| PGSC0003DMT400006548 | Potato | plastid | 51.75 | 50.96 |
| KRH23426 | Soybean | nucleus | 60.31 | 50.49 |
| KRH09902 | Soybean | nucleus | 61.09 | 49.22 |
| Os03t0742900-01 | Rice | vacuole | 44.75 | 48.73 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 60.31 | 48.44 |
| Os05t0559400-01 | Rice | nucleus | 52.92 | 48.4 |
| KRH60250 | Soybean | nucleus | 53.7 | 48.08 |
| KRH74730 | Soybean | plastid | 29.96 | 47.83 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 59.14 | 47.5 |
| Bra011082.1-P | Field mustard | nucleus | 53.31 | 47.24 |
| CDY06836 | Canola | nucleus | 46.3 | 47.22 |
| PGSC0003DMT400001013 | Potato | nucleus | 50.58 | 46.59 |
| Os01t0675700-01 | Rice | nucleus | 49.03 | 46.49 |
| Solyc12g007230.1.1 | Tomato | nucleus | 52.92 | 46.1 |
| KRH39325 | Soybean | nucleus | 54.86 | 45.93 |
| Os12t0601400-01 | Rice | nucleus | 35.02 | 45.69 |
| AT4G29080.1 | Thale cress | nucleus | 53.31 | 44.92 |
| Os03t0633500-01 | Rice | cytosol | 40.08 | 44.21 |
| KRH44313 | Soybean | nucleus | 55.25 | 44.1 |
| KRH47242 | Soybean | nucleus | 54.47 | 43.89 |
| Os01t0178500-02 | Rice | nucleus | 33.07 | 42.71 |
| Os12t0601300-01 | Rice | nucleus | 45.91 | 42.6 |
| Os03t0797800-01 | Rice | nucleus | 31.91 | 41.62 |
| Os07t0182400-01 | Rice | plastid | 33.85 | 39.73 |
| Os05t0178600-01 | Rice | nucleus | 31.91 | 38.68 |
| KRH41538 | Soybean | golgi, plasma membrane | 53.7 | 38.66 |
| Os03t0633800-01 | Rice | nucleus | 33.85 | 38.5 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:4338160 | ProteinID:AAS98482.1 | ProteinID:AAT93852.1 | EMBL:AK102762 |
| EMBL:AK106192 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | ProteinID:BAS92915.1 | ProteinID:EEE62895.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009734 | GO:GO:0009987 |
| InterPro:IPR000270 | EnsemblPlantsGene:Os05g0230700 | EnsemblPlants:Os05t0230700-01 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF17 | UniProt:Q75GB1 | SUPFAM:SSF54277 | UniParc:UPI0000359730 | RefSeq:XP_015640226.1 |
| SEG:seg | : | : | : | : | : |
Description
IAA17Similar to Auxin-responsive protein IAA17. (Os05t0230700-01);Similar to Auxin-responsive protein IAA17. (Os05t0230700-02);Similar to Auxin-responsive protein IAA17. (Os05t0230700-03)
Coordinates
chr5:+:7950915..7954374
Molecular Weight (calculated)
27472.4 Da
IEP (calculated)
7.347
GRAVY (calculated)
-0.591
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPLELDYI GLSPPVPAAA DAAADNDLKG TELRLGLPGS HSPDRSPPAA TLDLLPAAKG AKRGFSDEAR PLPASAAAAA AAGKGKKAAA GEEDEDAEEE
101: DKKVAAAPQA PAAKAQVVGW PPIRSYRKNT MATNQLKSSK EDAEAKQGQG FLYVKVSMDG APYLRKVDLK TYKNYKDLST ALEKMFIGFT TGKDGLSESR
201: KDGEYVLTYE DKDGDWMLVG DVPWEMFANS CRRLRIMKGS DAIGLAPRAV DKSKNRN
101: DKKVAAAPQA PAAKAQVVGW PPIRSYRKNT MATNQLKSSK EDAEAKQGQG FLYVKVSMDG APYLRKVDLK TYKNYKDLST ALEKMFIGFT TGKDGLSESR
201: KDGEYVLTYE DKDGDWMLVG DVPWEMFANS CRRLRIMKGS DAIGLAPRAV DKSKNRN
001: MSPEEELQSN VSVASSSPTS NCISRNTLGG LKEHNYLGLS DCSSVGSSTL SPLAEDDKAT ISLKATELTL GLPGSQSPAR DTELNLLSPA KLDEKPFFPL
101: LPSKDEICSS SQKNNASGNK RGFSDTMDQF AEAKSSVYTE KNWMFPEAAA TQSVTKKDVP QNIPKGQSST TNNSSSPPAA KAQIVGWPPV RSYRKNTLAT
201: TCKNSDEVDG RPGSGALFVK VSMDGAPYLR KVDLRSYTNY GELSSALEKM FTTFTLGQCG SNGAAGKDML SETKLKDLLN GKDYVLTYED KDGDWMLVGD
301: VPWEMFIDVC KKLKIMKGCD AIGLAPRAME KSKMRA
101: LPSKDEICSS SQKNNASGNK RGFSDTMDQF AEAKSSVYTE KNWMFPEAAA TQSVTKKDVP QNIPKGQSST TNNSSSPPAA KAQIVGWPPV RSYRKNTLAT
201: TCKNSDEVDG RPGSGALFVK VSMDGAPYLR KVDLRSYTNY GELSSALEKM FTTFTLGQCG SNGAAGKDML SETKLKDLLN GKDYVLTYED KDGDWMLVGD
301: VPWEMFIDVC KKLKIMKGCD AIGLAPRAME KSKMRA
Arabidopsis Description
IAA9Auxin-responsive protein IAA9 [Source:UniProtKB/Swiss-Prot;Acc:Q38827]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.