Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G031460.1 | Barley | cytosol | 73.0 | 83.48 |
| Os05t0230700-01 | Rice | nucleus | 80.23 | 82.1 |
| TraesCS3D01G162700.1 | Wheat | cytosol | 72.24 | 80.17 |
| TraesCS3A01G155200.1 | Wheat | cytosol | 74.52 | 80.0 |
| TraesCS3B01G181500.1 | Wheat | cytosol | 74.14 | 79.59 |
| Os06t0335500-01 | Rice | nucleus | 57.41 | 56.77 |
| GSMUA_Achr10P... | Banana | nucleus | 59.7 | 56.47 |
| GSMUA_Achr9P06290_001 | Banana | nucleus | 57.41 | 55.11 |
| GSMUA_Achr7P10930_001 | Banana | nucleus | 55.89 | 55.06 |
| GSMUA_Achr2P09210_001 | Banana | nucleus | 50.95 | 54.03 |
| GSMUA_Achr6P26730_001 | Banana | nucleus | 56.27 | 53.05 |
| Solyc03g120500.2.1 | Tomato | nucleus | 52.47 | 49.64 |
| PGSC0003DMT400006548 | Potato | plastid | 49.05 | 49.43 |
| KRH23426 | Soybean | nucleus | 56.65 | 48.53 |
| KRH09902 | Soybean | nucleus | 58.17 | 47.96 |
| Os05t0559400-01 | Rice | nucleus | 50.57 | 47.33 |
| KRH60250 | Soybean | nucleus | 50.57 | 46.34 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 56.27 | 46.25 |
| Bra011082.1-P | Field mustard | nucleus | 50.57 | 45.86 |
| Os03t0742900-01 | Rice | vacuole | 41.06 | 45.76 |
| CDY06836 | Canola | nucleus | 43.73 | 45.63 |
| Os12t0601400-01 | Rice | nucleus | 33.84 | 45.18 |
| PGSC0003DMT400001013 | Potato | nucleus | 47.91 | 45.16 |
| Solyc12g007230.1.1 | Tomato | nucleus | 50.19 | 44.75 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 54.37 | 44.69 |
| Os01t0675700-01 | Rice | nucleus | 46.01 | 44.65 |
| KRH39325 | Soybean | nucleus | 51.71 | 44.3 |
| AT4G29080.1 | Thale cress | nucleus | 50.57 | 43.61 |
| KRH74730 | Soybean | plastid | 26.62 | 43.48 |
| KRH47242 | Soybean | nucleus | 52.09 | 42.95 |
| KRH44313 | Soybean | nucleus | 50.95 | 41.61 |
| Os03t0633500-01 | Rice | cytosol | 36.12 | 40.77 |
| Os01t0178500-02 | Rice | nucleus | 30.8 | 40.7 |
| Os03t0797800-01 | Rice | nucleus | 30.04 | 40.1 |
| Os12t0601300-01 | Rice | nucleus | 42.21 | 40.07 |
| Os07t0182400-01 | Rice | plastid | 32.32 | 38.81 |
| Os03t0633800-01 | Rice | nucleus | 33.08 | 38.5 |
| KRH41538 | Soybean | golgi, plasma membrane | 50.57 | 37.25 |
| Os05t0178600-01 | Rice | nucleus | 29.66 | 36.79 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:4325890 | EMBL:AK066156 | EMBL:AK104654 | InterPro:AUX/IAA_dom |
| InterPro:AUX_IAA | ProteinID:BAD81283.1 | ProteinID:BAD81331.1 | ProteinID:BAF04409.1 | ProteinID:BAS71170.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009734 | GO:GO:0009987 |
| InterPro:IPR000270 | EnsemblPlantsGene:Os01g0231000 | EnsemblPlants:Os01t0231000-01 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF17 | UniProt:Q5NB25 | SUPFAM:SSF54277 | UniParc:UPI000049E70C | RefSeq:XP_015621955.1 |
| SEG:seg | : | : | : | : | : |
Description
IAA3Similar to Auxin-responsive protein (Aux/IAA) (Fragment). (Os01t0231000-01);Similar to Auxin-responsive protein (Aux/IAA) (Fragment). (Os01t0231000-02);Similar to Auxin-responsive protein (Aux/IAA) (Fragment). (Os01t0231000-03)
Coordinates
chr1:+:7249771..7253688
Molecular Weight (calculated)
28226.5 Da
IEP (calculated)
6.889
GRAVY (calculated)
-0.603
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPLELDYI GLSPPPPPPS SSSAAAARAD DVDLKGTELR LGLPGSESPD RRPAAIAAAA ATATTLELLP AKGAKRVFPD EAALTPPTAA AGKGKAAREG
101: EEVGAEEEDK KVAAPPQPAA KAQVVGWPPI RSYRKNTMAT NQIKSNKEDV DAKQGQGFLY VKVSMDGAPY LRKVDLKTYK NYKDMSLGLE KMFIGFSTGK
201: EGAENQKDGE YVLTYEDKDG DWMLVGDVPW EMFTDSCRRL RIMKGSDAIG LAPRAGEKSK NRN
101: EEVGAEEEDK KVAAPPQPAA KAQVVGWPPI RSYRKNTMAT NQIKSNKEDV DAKQGQGFLY VKVSMDGAPY LRKVDLKTYK NYKDMSLGLE KMFIGFSTGK
201: EGAENQKDGE YVLTYEDKDG DWMLVGDVPW EMFTDSCRRL RIMKGSDAIG LAPRAGEKSK NRN
001: MSYRLLSVDK DELVTSPCLK ERNYLGLSDC SSVDSSTIPN VVGKSNLNFK ATELRLGLPE SQSPERETDF GLLSPRTPDE KLLFPLLPSK DNGSATTGHK
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
Arabidopsis Description
IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.