Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G181500.1 | Wheat | cytosol | 88.7 | 83.27 |
| TraesCS3A01G155200.1 | Wheat | cytosol | 88.26 | 82.86 |
| TraesCS3D01G162700.1 | Wheat | cytosol | 83.91 | 81.43 |
| Os01t0231000-01 | Rice | nucleus | 83.48 | 73.0 |
| HORVU0Hr1G021630.1 | Barley | cytosol, mitochondrion, nucleus | 42.61 | 53.26 |
| GSMUA_Achr9P06290_001 | Banana | nucleus | 60.43 | 50.73 |
| GSMUA_Achr10P... | Banana | nucleus | 61.3 | 50.72 |
| GSMUA_Achr7P10930_001 | Banana | nucleus | 57.39 | 49.44 |
| GSMUA_Achr6P26730_001 | Banana | nucleus | 58.7 | 48.39 |
| PGSC0003DMT400006548 | Potato | plastid | 54.78 | 48.28 |
| GSMUA_Achr2P09210_001 | Banana | nucleus | 51.3 | 47.58 |
| PGSC0003DMT400001013 | Potato | nucleus | 54.78 | 45.16 |
| KRH23426 | Soybean | nucleus | 60.0 | 44.95 |
| KRH60250 | Soybean | nucleus | 56.09 | 44.95 |
| KRH74730 | Soybean | plastid | 31.3 | 44.72 |
| Solyc03g120500.2.1 | Tomato | nucleus | 53.91 | 44.6 |
| KRH09902 | Soybean | nucleus | 61.74 | 44.51 |
| CDY06836 | Canola | nucleus | 48.26 | 44.05 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 45.22 | 43.88 |
| Solyc12g007230.1.1 | Tomato | nucleus | 55.65 | 43.39 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 58.26 | 41.88 |
| Bra011082.1-P | Field mustard | nucleus | 52.17 | 41.38 |
| KRH39325 | Soybean | nucleus | 55.22 | 41.37 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 57.39 | 41.25 |
| HORVU1Hr1G025670.3 | Barley | nucleus | 35.65 | 41.0 |
| HORVU3Hr1G062160.2 | Barley | nucleus, plastid | 46.09 | 40.77 |
| AT4G29080.1 | Thale cress | nucleus | 52.17 | 39.34 |
| KRH47242 | Soybean | nucleus | 54.35 | 39.19 |
| KRH44313 | Soybean | nucleus | 53.91 | 38.51 |
| HORVU7Hr1G084940.3 | Barley | plastid | 30.87 | 37.77 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 45.22 | 37.68 |
| HORVU3Hr1G088810.1 | Barley | plastid | 37.39 | 36.29 |
| KRH41538 | Soybean | golgi, plasma membrane | 55.65 | 35.85 |
| HORVU5Hr1G106350.2 | Barley | plastid | 34.35 | 35.11 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 41.74 | 34.16 |
| HORVU1Hr1G086070.6 | Barley | plastid | 46.09 | 33.87 |
| HORVU5Hr1G014290.1 | Barley | mitochondrion | 34.78 | 31.25 |
| HORVU3Hr1G022540.7 | Barley | cytosol, nucleus | 28.7 | 30.56 |
| HORVU5Hr1G093640.1 | Barley | mitochondrion | 36.09 | 26.43 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A287KMZ6 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:HORVU3Hr1G031460 |
| EnsemblPlants:HORVU3Hr1G031460.1 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF17 | SUPFAM:SSF54277 | UniParc:UPI000B460B1B | SEG:seg | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A287KMZ6]
Coordinates
chrchr3H:-:156625725..156629839
Molecular Weight (calculated)
24793.4 Da
IEP (calculated)
9.436
GRAVY (calculated)
-0.758
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXRADDDLK GTELRLGLPG CESPDRRPVA ATTTLELLPA KGAKRGFSDE VLPPAPSAAG GKGKETSGDE KDKKVAAPPQ PAAKAQVVGW PPIRSYRKNT
101: MATTTNQLKS SKEDSDAKQG QEFLYVKVSM DGAPYLRKVD LKTYKNYKDL SLGLEKMFIG FSTGKDGVSE NRKDGEYVLT YEDKDGDWML VGDVPWEMFT
201: ESCRRLRVMK GSDAVGLAVP RAGDKSKNKN
101: MATTTNQLKS SKEDSDAKQG QEFLYVKVSM DGAPYLRKVD LKTYKNYKDL SLGLEKMFIG FSTGKDGVSE NRKDGEYVLT YEDKDGDWML VGDVPWEMFT
201: ESCRRLRVMK GSDAVGLAVP RAGDKSKNKN
001: MSYRLLSVDK DELVTSPCLK ERNYLGLSDC SSVDSSTIPN VVGKSNLNFK ATELRLGLPE SQSPERETDF GLLSPRTPDE KLLFPLLPSK DNGSATTGHK
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
Arabidopsis Description
IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.