Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 84.42 | 88.96 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 83.85 | 86.8 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 84.14 | 86.59 |
| Os01t0741900-01 | Rice | nucleus | 66.01 | 69.55 |
| KXG33336 | Sorghum | nucleus | 62.32 | 60.27 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 60.06 | 59.38 |
| PGSC0003DMT400006709 | Potato | nucleus | 36.83 | 45.94 |
| Bra036557.1-P | Field mustard | nucleus | 22.66 | 45.71 |
| CDX87072 | Canola | cytosol | 22.66 | 45.71 |
| AT5G25890.1 | Thale cress | nucleus | 22.66 | 45.71 |
| Solyc03g121060.2.1 | Tomato | nucleus | 37.11 | 45.64 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 22.1 | 44.83 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 22.1 | 44.83 |
| Bra009867.1-P | Field mustard | cytosol | 22.1 | 44.32 |
| KRH09948 | Soybean | nucleus | 39.94 | 44.06 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 30.31 | 43.32 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 41.93 | 42.9 |
| AT3G16500.1 | Thale cress | nucleus | 32.01 | 42.01 |
| CDY64626 | Canola | cytosol | 31.73 | 41.64 |
| CDY34957 | Canola | nucleus | 31.44 | 41.26 |
| Bra021184.1-P | Field mustard | nucleus | 31.44 | 41.26 |
| CDY19790 | Canola | cytosol | 22.66 | 41.03 |
| AT1G51950.1 | Thale cress | nucleus | 30.88 | 40.82 |
| CDX75884 | Canola | cytosol | 30.88 | 40.22 |
| KRH23388 | Soybean | nucleus | 39.38 | 40.17 |
| CDY43104 | Canola | nucleus | 30.31 | 40.07 |
| Bra001634.1-P | Field mustard | nucleus | 30.88 | 40.07 |
| CDX82399 | Canola | nucleus | 30.88 | 40.07 |
| KRH47203 | Soybean | nucleus | 35.98 | 40.06 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 27.76 | 40.0 |
| Bra014303.1-P | Field mustard | nucleus | 30.59 | 40.0 |
| CDY46538 | Canola | nucleus | 30.59 | 40.0 |
| CDX87863 | Canola | nucleus | 28.61 | 39.76 |
| KRH44271 | Soybean | nucleus | 35.13 | 39.62 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.28 | 39.29 |
| CDY22876 | Canola | nucleus | 27.76 | 38.74 |
| CDY53439 | Canola | nucleus | 29.75 | 38.46 |
| Bra018938.1-P | Field mustard | nucleus | 27.48 | 38.34 |
| Bra022164.1-P | Field mustard | nucleus | 30.88 | 38.25 |
| CDX92077 | Canola | nucleus | 30.88 | 38.25 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 39.09 | 37.6 |
| CDY33844 | Canola | nucleus | 26.91 | 37.55 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 41.36 | 33.26 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 15.01 | 31.55 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 14.45 | 29.31 |
| HORVU6Hr1G091260.3 | Barley | nucleus | 21.53 | 27.05 |
| HORVU7Hr1G077110.10 | Barley | nucleus | 20.11 | 22.05 |
| HORVU4Hr1G016160.1 | Barley | plastid | 19.55 | 19.22 |
| HORVU1Hr1G017770.6 | Barley | cytosol, mitochondrion, vacuole | 9.92 | 16.91 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:HORVU3Hr1G070620 | EnsemblPlants:HORVU3Hr1G070620.5 |
| InterPro:IPR000270 | UniProt:M0URL9 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF90 | SUPFAM:SSF54277 | UniParc:UPI000295BD8F | SEG:seg | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:M0URL9]
Coordinates
chrchr3H:-:534070126..534073477
Molecular Weight (calculated)
37991.8 Da
IEP (calculated)
7.952
GRAVY (calculated)
-0.597
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MGENSMEREA MPRLLDLIPD EKEWSLRGGA PGHGGSENTG FGSDEDEKLE LKLGLPGLVK EEPAASSRDN RVVHQESPAL SLGYHPHKHS TANPTTTTGA
101: KRGFLDTVEA KAQGHEKEQK QQARAAACGK ELAAEENTAA AAVGERKKGC CPPPPSHAPP AAAPARNIGN RPQARGRGAA VPVVGWPPIR SFRRNLASTS
201: ASKQVHEPQI AEADAKAALN CKKSPLVKIN MDGIPIGRKV DLAACDSYER LSLAVKDLFH GFLEVQRDTP RAERAQQGAD EKIFSQLLDG SGEYTLVYED
301: NEGDRMLVGD VPWNVFVSTA KRLRVLRSSE LSHGLVSATP LQFASRSLPI GRN
101: KRGFLDTVEA KAQGHEKEQK QQARAAACGK ELAAEENTAA AAVGERKKGC CPPPPSHAPP AAAPARNIGN RPQARGRGAA VPVVGWPPIR SFRRNLASTS
201: ASKQVHEPQI AEADAKAALN CKKSPLVKIN MDGIPIGRKV DLAACDSYER LSLAVKDLFH GFLEVQRDTP RAERAQQGAD EKIFSQLLDG SGEYTLVYED
301: NEGDRMLVGD VPWNVFVSTA KRLRVLRSSE LSHGLVSATP LQFASRSLPI GRN
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
Arabidopsis Description
IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.