Factsheet for HORVU2Hr1G121110.32

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G017770.6
HORVU1Hr1G081910.1
HORVU5Hr1G014290.1
HORVU5Hr1G014300.4
HORVU5Hr1G081180.1
HORVU5Hr1G093580.2
HORVU5Hr1G093640.1
HORVU5Hr1G094220.1
HORVU5Hr1G106350.2
HORVU6Hr1G088140.2
HORVU7Hr1G026970.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37020.1	HORVU5Hr1G014300.4	AT1G04250.1	21734647
AT5G37020.1	HORVU5Hr1G093580.2	AT1G04250.1	21734647
AT5G37020.1	HORVU5Hr1G094220.1	AT1G04250.1	21734647
AT5G37020.1	HORVU1Hr1G081910.1	AT1G80390.1	21734647
AT5G37020.1	HORVU5Hr1G081180.1	AT1G80390.1	21734647
AT5G37020.1	HORVU5Hr1G014300.4	AT3G23050.1	21734647
AT5G37020.1	HORVU5Hr1G093580.2	AT3G23050.1	21734647
AT5G37020.1	HORVU5Hr1G094220.1	AT3G23050.1	21734647
AT5G37020.1	HORVU1Hr1G017770.6	AT3G62100.1	21734647
AT5G37020.1	HORVU5Hr1G014290.1	AT4G14560.1	14729917
AT5G37020.1	HORVU5Hr1G093640.1	AT4G14560.1	14729917
AT5G37020.1	HORVU5Hr1G106350.2	AT4G14560.1	14729917
AT5G37020.1	HORVU5Hr1G014290.1	AT4G14560.1	21734647
AT5G37020.1	HORVU5Hr1G093640.1	AT4G14560.1	21734647
AT5G37020.1	HORVU5Hr1G106350.2	AT4G14560.1	21734647
AT5G37020.1	HORVU6Hr1G088140.2	AT4G32280.1	21734647
AT5G37020.1	HORVU7Hr1G026970.2	AT4G32280.1	21734647
AT5G37020.1	HORVU5Hr1G014290.1	AT5G43700.1	21734647
AT5G37020.1	HORVU5Hr1G093640.1	AT5G43700.1	21734647
AT5G37020.1	HORVU5Hr1G106350.2	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G548900.1	Wheat	nucleus	97.61	98.2
TraesCS2B01G578500.1	Wheat	nucleus	97.49	98.08
TraesCS2A01G547800.1	Wheat	nucleus	97.26	98.07
Os04t0671900-01	Rice	nucleus	89.86	92.05
KXG27404	Sorghum	nucleus	89.5	91.58
Zm00001d001879_P036	Maize	nucleus	88.31	90.58
Zm00001d026590_P003	Maize	nucleus	83.65	82.67
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	28.04	78.6
GSMUA_Achr4P25960_001	Banana	nucleus	61.1	63.92
GSMUA_Achr11P...	Banana	nucleus	61.34	63.46
KRH17251	Soybean	nucleus	62.65	62.28
KRH30740	Soybean	nucleus	62.65	62.2
KRH72896	Soybean	nucleus	62.65	61.98
KRG98044	Soybean	nucleus	62.17	61.95
Solyc02g037530.2.1	Tomato	nucleus	60.86	60.57
Solyc03g031970.2.1	Tomato	nucleus	60.62	60.19
GSMUA_AchrUn_...	Banana	mitochondrion	36.04	59.1
AT5G37020.1	Thale cress	nucleus	57.04	58.94
CDY39274	Canola	nucleus	54.77	58.92
CDY07460	Canola	nucleus	54.77	58.77
Bra004125.1-P	Field mustard	nucleus	54.53	58.59
PGSC0003DMT400048034	Potato	nucleus	52.51	58.51
CDY53537	Canola	nucleus	55.97	57.62
CDX74594	Canola	nucleus	56.09	57.39
Bra028110.1-P	Field mustard	nucleus	56.32	55.92
VIT_04s0079g00200.t01	Wine grape	nucleus	45.7	54.17
HORVU7Hr1G106280.1	Barley	nucleus	58.47	52.24
HORVU6Hr1G026730.9	Barley	nucleus	57.52	51.88
HORVU5Hr1G009650.20	Barley	nucleus	55.13	51.85
GSMUA_Achr8P13620_001	Banana	nucleus	23.51	40.7
HORVU7Hr1G033820.5	Barley	nucleus	46.66	36.68
HORVU2Hr1G076920.3	Barley	nucleus	29.12	36.53
HORVU2Hr1G109650.18	Barley	nucleus	38.19	33.44
HORVU7Hr1G051930.4	Barley	nucleus	41.65	32.23
HORVU6Hr1G020330.30	Barley	nucleus	43.68	32.08
HORVU7Hr1G096460.7	Barley	mitochondrion, nucleus, vacuole	41.41	28.87
HORVU3Hr1G097200.10	Barley	nucleus	28.4	28.17
HORVU3Hr1G096410.4	Barley	nucleus, plastid	26.49	27.61
HORVU3Hr1G032230.6	Barley	nucleus, plastid	26.13	27.38
HORVU3Hr1G096510.3	Barley	plastid	26.97	27.1

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A287JPZ7	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009733	GO:GO:0009734	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:HORVU2Hr1G121110	EnsemblPlants:HORVU2Hr1G121110.32	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF2	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000B464E56
SEG:seg	:	:	:	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A287JPZ7]

Coordinates

chrchr2H:+:750829355..750835636

Molecular Weight (calculated)

93155.2 Da

IEP (calculated)

6.236

GRAVY (calculated)

-0.516

Length

838 amino acids

Sequence
(BLAST)

001: MSSSSGASLG GQPPPPPAAP PEEGQLEKKN LNSELWHACA GPLVCLPTLG TRVVYFPQGH SEQVAASTNK EVEGHIPNYP NLPPQLICQL HDVTMHADVE
101: TDEVYAQMTL QPLNPQEQND AYLPAEMGIM SKQPTNYFCK TLTASDTSTH GGFSVPRRAA ERVFPPLDFT QQPPAQELIA RDIHDVEWKF RHIFRGQPKR
201: HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLWLGIRRAN RTQTVMPSSV LSSDSMHIGL LAAAAHAAST NSRFTIFYNP RACPSEFVIP LSKYIKAVFH
301: TRISVGMRFR MLFETEESSV RRYMGTITEV SDADPVRWAS SYWRSVKVGW DESTAGERPP RVSLWEIEPL TTFPMYPSLF PLRVKHPWYS GVAGLQDDSN
401: ALMWLRGVAG DGGYQSMNFQ SPGIGSWGQQ RLHPSLLSSD HDQYQAVVAA AAAASQSGGY MKQQFLNLQQ PMQSPQEHCN LNPLLQQQIL QQASQQQAVS
501: AESQNIQTML NSSAIQHQLQ QLQQMQQVQQ AQQVQQAHID QKQKIQSDQS YHVPTSASLP SPTSLPSHLR EKFGFSDPNV NSSSFTTSSS SDNMLESNFL
601: QGNSKAVDLS RFNQPVASDQ QQQQQQQQQQ QQQAWKQKFM GSQSLSFGGS GLLSSPTSKD GSLESKIGSD VQNQSLFSPQ VDSSSLLYNM VPNMASNVAD
701: NSMSTIPSGS TYLQSPMYGC LDDSSGIFQN TGENDPTSRT FVKVYKSGSV GRSLDITRFS NYAELREELG QMFGIRGQLD DPDRSGWQLV FVDRENDVLL
801: LGDDPWESFV NSVWYIKILS PEDVHKLGKQ GNDPRYLS

Best Arabidopsis Sequence Match ( AT1G30330.1 )
(BLAST)

001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.