Factsheet for Bra028110.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001598.1-P
Bra001900.1-P
Bra003484.1-P
Bra007661.1-P
Bra011332.1-P
Bra014411.1-P
Bra015289.1-P
Bra015298.1-P
Bra018993.1-P
Bra021117.1-P
Bra023958.1-P
Bra027232.1-P
Bra027504.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra035185.1-P
Bra039732.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37020.1	Bra015289.1-P	AT1G04100.1	21734647
AT5G37020.1	Bra015298.1-P	AT1G04250.1	21734647
AT5G37020.1	Bra030560.1-P	AT1G04250.1	21734647
AT5G37020.1	Bra032520.1-P	AT1G04250.1	21734647
AT5G37020.1	Bra018993.1-P	AT1G52830.1	14729917
AT5G37020.1	Bra035185.1-P	AT1G80390.1	21734647
AT5G37020.1	Bra001598.1-P	AT3G15540.1	14729917
AT5G37020.1	Bra021117.1-P	AT3G15540.1	14729917
AT5G37020.1	Bra027232.1-P	AT3G15540.1	14729917
AT5G37020.1	Bra001598.1-P	AT3G15540.1	21734647
AT5G37020.1	Bra021117.1-P	AT3G15540.1	21734647
AT5G37020.1	Bra027232.1-P	AT3G15540.1	21734647
AT5G37020.1	Bra001900.1-P	AT3G23050.1	21734647
AT5G37020.1	Bra033886.1-P	AT3G23050.1	21734647
AT5G37020.1	Bra003484.1-P	AT3G62100.1	21734647
AT5G37020.1	Bra007661.1-P	AT3G62100.1	21734647
AT5G37020.1	Bra014411.1-P	AT3G62100.1	21734647
AT5G37020.1	Bra039732.1-P	AT4G14560.1	14729917
AT5G37020.1	Bra039732.1-P	AT4G14560.1	21734647
AT5G37020.1	Bra011332.1-P	AT4G32280.1	21734647
AT5G37020.1	Bra023958.1-P	AT4G32280.1	21734647
AT5G37020.1	Bra027504.1-P	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74594	Canola	nucleus	96.21	99.15
CDY53537	Canola	nucleus	93.6	97.05
AT5G37020.1	Thale cress	nucleus	89.22	92.85
Bra004125.1-P	Field mustard	nucleus	72.99	78.97
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	27.25	76.92
KRH30740	Soybean	nucleus	67.06	67.06
KRH17251	Soybean	nucleus	66.94	67.02
KRH72896	Soybean	nucleus	67.18	66.94
KRG98044	Soybean	nucleus	66.35	66.59
Solyc03g031970.2.1	Tomato	nucleus	64.57	64.57
Solyc02g037530.2.1	Tomato	nucleus	64.22	64.37
GSMUA_Achr11P...	Banana	nucleus	59.24	61.73
PGSC0003DMT400048034	Potato	nucleus	54.86	61.57
GSMUA_Achr4P25960_001	Banana	nucleus	58.06	61.17
KXG27404	Sorghum	nucleus	56.64	58.36
Os04t0671900-01	Rice	nucleus	56.52	58.31
Zm00001d001879_P036	Maize	nucleus	56.28	58.14
GSMUA_AchrUn_...	Banana	mitochondrion	35.07	57.93
VIT_04s0079g00200.t01	Wine grape	nucleus	48.46	57.85
TraesCS2A01G547800.1	Wheat	nucleus	55.69	56.56
TraesCS2D01G548900.1	Wheat	nucleus	55.69	56.42
HORVU2Hr1G121110.32	Barley	nucleus	55.92	56.32
TraesCS2B01G578500.1	Wheat	nucleus	55.57	56.3
Bra010776.1-P	Field mustard	nucleus	53.91	54.69
Zm00001d026590_P003	Maize	nucleus	54.38	54.13
Bra025775.1-P	Field mustard	nucleus	30.09	54.04
GSMUA_Achr8P13620_001	Banana	nucleus	23.7	41.32
Bra014419.1-P	Field mustard	nucleus	26.3	40.0
Bra004530.1-P	Field mustard	nucleus	27.13	39.21
Bra016492.1-P	Field mustard	nucleus	37.09	37.44
Bra013748.1-P	Field mustard	nucleus	26.42	37.04
Bra019255.1-P	Field mustard	nucleus	26.78	36.28
Bra035427.1-P	Field mustard	nucleus	28.44	36.09
Bra012190.1-P	Field mustard	nucleus	36.26	35.29
Bra034234.1-P	Field mustard	nucleus	22.04	34.38
Bra016517.1-P	Field mustard	nucleus	40.88	34.16
Bra025720.1-P	Field mustard	nucleus	42.42	34.13
Bra002479.1-P	Field mustard	nucleus	29.03	32.32
Bra020125.1-P	Field mustard	nucleus	41.82	32.09
Bra027944.1-P	Field mustard	nucleus	20.5	31.51
Bra018124.1-P	Field mustard	nucleus	20.5	31.17
Bra010048.1-P	Field mustard	nucleus	30.92	30.67
Bra035910.1-P	Field mustard	nucleus	30.45	28.94
Bra017362.1-P	Field mustard	nucleus	18.48	28.89
Bra002327.1-P	Field mustard	nucleus	41.23	24.18
Bra007632.1-P	Field mustard	nucleus	26.54	21.23

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01306	ProteinID:AFD01306.1
InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra028110	EnsemblPlants:Bra028110.1	EnsemblPlants:Bra028110.1-P	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733	GO:GO:0009734	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0043565	UniProt:H9B4D3	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	EMBL:JN979472	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF2	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
UniParc:UPI0002535794	SEG:seg	:	:	:	:

Description

AT5G37020 (E=1e-219) ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTOR 8); transcription factor

Coordinates

chrA04:-:5786109..5789811

Molecular Weight (calculated)

93120.1 Da

IEP (calculated)

6.482

GRAVY (calculated)

-0.407

Length

844 amino acids

Sequence
(BLAST)

001: MKLSTSGLVQ QSHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYSLQ PPAQELLARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRRATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLHGIHPPF VSSPKLLVAI
401: NLKSLLVFTD GRGELGSGLP WLRGGGGGEQ QGLLPLNYPS VGLFPWMQQR LDLAQLGTDN NQQYQAMLAA GLQNMGGGDP LRQQFVQLQE PPPHHQYLQQ
501: SASHNSDLML QQQQQQQHLM HAQTQIMSEN LPQRQEVSKQ QPGGGGGQQS VDQNAYLNAL KMQNGQLQQW QQHSDMPSPS FMKADFTDKF PTTATPMQQN
601: SASPGSGHGS NLLNFSITGQ SVLPEQLMGE GWSPKASNTF SEPLSLPPQA YAGKSLALEP ASANVNPSVF GVDPGSGLFL PSTVPRFASS SSGGDAEAYP
701: MSLGDSGFEN SLYNSCMQDT THELLHGVGQ ISPSNQTKNF VKVYKSGSVG RSLDISRFSS YHELREELGK MFAIEGLLED PLRSGWQLVF VDKENDILLL
801: GDDPWESFVS NVWYIKILSP EDVQEMGDHG EGSGGSLPQN PTQL

Best Arabidopsis Sequence Match ( AT5G37020.1 )
(BLAST)

001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L

Arabidopsis Description

ARF8Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.