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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001598.1-P
Bra001670.1-P
Bra001900.1-P
Bra007632.1-P
Bra009867.1-P
Bra011332.1-P
Bra012190.1-P
Bra014419.1-P
Bra015298.1-P
Bra016492.1-P
Bra018993.1-P
Bra021117.1-P
Bra021257.1-P
Bra022224.1-P
Bra023958.1-P
Bra025775.1-P
Bra026166.1-P
Bra027232.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra035427.1-P
Bra036557.1-P
Bra039732.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G19850.1 Bra015298.1-P AT1G04250.1 21734647
AT1G19850.1 Bra030560.1-P AT1G04250.1 21734647
AT1G19850.1 Bra032520.1-P AT1G04250.1 21734647
AT1G19850.1 Bra026166.1-P AT1G15050.1 21734647
AT1G19850.1 Bra012190.1-P AT1G19850.1 14729917
AT1G19850.1 Bra016492.1-P AT1G19850.1 14729917
AT1G19850.1 Bra025775.1-P AT1G19850.1 14729917
AT1G19850.1 Bra012190.1-P AT1G19850.1 21734647
AT1G19850.1 Bra016492.1-P AT1G19850.1 21734647
AT1G19850.1 Bra025775.1-P AT1G19850.1 21734647
AT1G19850.1 Bra012190.1-P AT1G19850.1 22096563
AT1G19850.1 Bra016492.1-P AT1G19850.1 22096563
AT1G19850.1 Bra025775.1-P AT1G19850.1 22096563
AT1G19850.1 Bra012190.1-P AT1G19850.1 24485461
AT1G19850.1 Bra016492.1-P AT1G19850.1 24485461
AT1G19850.1 Bra025775.1-P AT1G19850.1 24485461
AT1G19850.1 Bra018993.1-P AT1G52830.1 14729917
AT1G19850.1 Bra035427.1-P AT1G59750.1 22096563
AT1G19850.1 Bra001598.1-P AT3G15540.1 14729917
AT1G19850.1 Bra021117.1-P AT3G15540.1 14729917
AT1G19850.1 Bra027232.1-P AT3G15540.1 14729917
AT1G19850.1 Bra001598.1-P AT3G15540.1 22096563
AT1G19850.1 Bra021117.1-P AT3G15540.1 22096563
AT1G19850.1 Bra027232.1-P AT3G15540.1 22096563
AT1G19850.1 Bra001670.1-P AT3G17600.1 21734647
AT1G19850.1 Bra021257.1-P AT3G17600.1 21734647
AT1G19850.1 Bra022224.1-P AT3G17600.1 21734647
AT1G19850.1 Bra001900.1-P AT3G23050.1 21734647
AT1G19850.1 Bra033886.1-P AT3G23050.1 21734647
AT1G19850.1 Bra007632.1-P AT3G61830.1 22096563
AT1G19850.1 Bra014419.1-P AT3G61830.1 22096563
AT1G19850.1 Bra039732.1-P AT4G14560.1 14729917
AT1G19850.1 Bra039732.1-P AT4G14560.1 22096563
AT1G19850.1 Bra039732.1-P AT4G14560.1 9342315
AT1G19850.1 Bra011332.1-P AT4G32280.1 21734647
AT1G19850.1 Bra023958.1-P AT4G32280.1 21734647
AT1G19850.1 Bra009867.1-P AT5G25890.1 21734647
AT1G19850.1 Bra036557.1-P AT5G25890.1 21734647
AT1G19850.1 Bra009867.1-P AT5G25890.1 22096563
AT1G19850.1 Bra036557.1-P AT5G25890.1 22096563
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY29392 Canola nucleus 99.15 53.2
Bra016492.1-P Field mustard nucleus 93.19 52.39
CDY39348 Canola nucleus 97.66 52.22
Bra012190.1-P Field mustard nucleus 95.53 51.79
AT1G19850.1 Thale cress nucleus 95.96 50.0
GSMUA_Achr1P20040_001 Banana nucleus 70.85 42.58
KRH05923 Soybean nucleus 80.43 40.51
KRH17404 Soybean nucleus 79.79 40.32
PGSC0003DMT400009660 Potato nucleus 79.36 40.15
Solyc04g081240.2.1 Tomato nucleus 79.36 40.11
VIT_18s0001g13930.t01 Wine grape nucleus 80.0 39.45
GSMUA_Achr6P36980_001 Banana nucleus 67.66 37.06
EES13038 Sorghum nucleus 68.51 34.04
Bra014419.1-P Field mustard nucleus 40.0 33.87
Zm00001d001945_P002 Maize nucleus 67.66 33.54
Zm00001d026540_P002 Maize nucleus 68.09 33.37
TraesCS2B01G519200.2 Wheat nucleus 67.66 33.3
TraesCS2A01G491000.1 Wheat nucleus 67.66 33.3
TraesCS2D01G491200.2 Wheat nucleus 67.66 33.3
Os04t0664400-01 Rice nucleus 64.68 33.04
HORVU2Hr1G109650.18 Barley nucleus 67.23 33.02
Bra004530.1-P Field mustard nucleus 40.64 32.71
Bra013748.1-P Field mustard nucleus 41.7 32.56
GSMUA_Achr1P20000_001 Banana nucleus 65.74 31.82
Bra004125.1-P Field mustard nucleus 52.77 31.79
Bra019255.1-P Field mustard nucleus 41.28 31.14
Bra010776.1-P Field mustard nucleus 53.83 30.41
Bra028110.1-P Field mustard nucleus 54.04 30.09
Bra035427.1-P Field mustard nucleus 42.13 29.77
Bra034234.1-P Field mustard nucleus 33.19 28.84
GSMUA_Achr1P20010_001 Banana plasma membrane, plastid 60.43 27.05
Bra016517.1-P Field mustard nucleus 57.87 26.93
Bra025720.1-P Field mustard nucleus 60.0 26.88
Bra018124.1-P Field mustard nucleus 31.7 26.85
Bra027944.1-P Field mustard nucleus 30.85 26.41
Bra002479.1-P Field mustard nucleus 42.34 26.25
Bra020125.1-P Field mustard nucleus 59.36 25.36
Bra010048.1-P Field mustard nucleus 45.32 25.03
Bra035910.1-P Field mustard nucleus 44.04 23.31
Bra017362.1-P Field mustard nucleus 25.96 22.59
Bra002327.1-P Field mustard nucleus 58.51 19.11
Bra007632.1-P Field mustard nucleus 41.06 18.29
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90ProteinID:AFD01301ProteinID:AFD01301.1
InterPro:AUX/IAA_domInterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlantsGene:Bra025775EnsemblPlants:Bra025775.1EnsemblPlants:Bra025775.1-P
InterPro:DNA-bd_pseudobarrel_sfGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719
GO:GO:0009725GO:GO:0009734GO:GO:0009987UniProt:H9B4C8InterPro:IPR003340InterPro:IPR015300
EMBL:JN979467PFAM:PF02309PFAM:PF02362PFAM:PF06507PFscan:PS50863PANTHER:PTHR31384
PANTHER:PTHR31384:SF10SMART:SM01019SUPFAM:SSF101936UniParc:UPI000253578FSEG:seg:
Description
AT1G19850 (E=7e-173) MP, ARF5, IAA24 | MP (MONOPTEROS); transcription factor
Coordinates
chrA06:+:7913387..7917061
Molecular Weight (calculated)
52563.7 Da
IEP (calculated)
7.538
GRAVY (calculated)
-0.339
Length
470 amino acids
Sequence
(BLAST)
001: MMASVEEKMK TNGLVNGGTT TTSQSSLLEE MKLLTDQSGT RKPVINSELW HACAGPLVCL PQVGSLVYYF SQGHSEQVAV STRRSATTQV PNYPNLPSQL
101: MCQVHNVTLH ADKDSDEIYA QMSLQPVHSE RDVFPVPDFG LLNRSKHPAE FFCKTLTASD TSTHGGFSVP RRAAEKLFPP LDYTAQPPTQ ELVVRDLHEN
201: TWTFRHIYRG QPKRHLLTTG WSLFVGSKRL RAGDSVLFIR DEKSQLMVGV RRANRQQTAL PSSVLSADSM HIGVLAAAAH ATANRTPFLI FYNPRACPAE
301: FVIPLAKYRK AICGAQLSAG MRFGMMFETE DSGKRSDMDP LRWSGSKWRN LQVEWDEPGC NDKPTRVSPW DIETPESLFI FPSLTSGLKR QLHPSYFGLL
401: TRPQSSGWKL VYVDYESDVL LVGDDPWEEF VGCVRCIRIL SPTEVEQMSE EGMKLLNSAC INDLKSSVSK
Best Arabidopsis Sequence Match ( AT1G19850.1 )
(BLAST)
001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
Arabidopsis Description
ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.