Factsheet for GSMUA_Achr1P20000_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P20000_001
GSMUA_Achr1P20010_001
GSMUA_Achr1P20040_001
GSMUA_Achr2P12630_001
GSMUA_Achr2P19760_001
GSMUA_Achr3P16300_001
GSMUA_Achr4P05200_001
GSMUA_Achr4P21020_001
GSMUA_Achr4P21030_001
GSMUA_Achr4P22520_001
GSMUA_Achr4P22530_001
GSMUA_Achr5P03110_001
GSMUA_Achr5P09310_001
GSMUA_Achr6P07390_001
GSMUA_Achr6P12780_001
GSMUA_Achr6P29070_001
GSMUA_Achr6P36980_001
GSMUA_Achr7P13680_001
GSMUA_Achr7P24330_001
GSMUA_Achr8P20610_001
GSMUA_Achr8P20620_001
GSMUA_Achr8P29850_001
GSMUA_Achr9P08310_001
GSMUA_Achr9P10690_001
GSMUA_Achr9P10700_001
GSMUA_Achr9P16800_001
GSMUA_Achr9P24330_001
GSMUA_Achr9P25550_001
GSMUA_Achr9P26900_001
GSMUA_Achr9P26910_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19850.1	GSMUA_Achr10P...	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr4P21020_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr4P22520_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr8P20610_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr9P10700_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr9P25550_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr1P20000_001	AT1G19850.1	14729917
AT1G19850.1	GSMUA_Achr1P20010_001	AT1G19850.1	14729917
AT1G19850.1	GSMUA_Achr1P20040_001	AT1G19850.1	14729917
AT1G19850.1	GSMUA_Achr6P36980_001	AT1G19850.1	14729917
AT1G19850.1	GSMUA_Achr1P20000_001	AT1G19850.1	21734647
AT1G19850.1	GSMUA_Achr1P20010_001	AT1G19850.1	21734647
AT1G19850.1	GSMUA_Achr1P20040_001	AT1G19850.1	21734647
AT1G19850.1	GSMUA_Achr6P36980_001	AT1G19850.1	21734647
AT1G19850.1	GSMUA_Achr1P20000_001	AT1G19850.1	22096563
AT1G19850.1	GSMUA_Achr1P20010_001	AT1G19850.1	22096563
AT1G19850.1	GSMUA_Achr1P20040_001	AT1G19850.1	22096563
AT1G19850.1	GSMUA_Achr6P36980_001	AT1G19850.1	22096563
AT1G19850.1	GSMUA_Achr1P20000_001	AT1G19850.1	24485461
AT1G19850.1	GSMUA_Achr1P20010_001	AT1G19850.1	24485461
AT1G19850.1	GSMUA_Achr1P20040_001	AT1G19850.1	24485461
AT1G19850.1	GSMUA_Achr6P36980_001	AT1G19850.1	24485461
AT1G19850.1	GSMUA_Achr10P...	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr6P07390_001	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr6P12780_001	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr6P29070_001	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr9P08310_001	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr8P29850_001	AT3G17600.1	21734647
AT1G19850.1	GSMUA_Achr9P16800_001	AT3G17600.1	21734647
AT1G19850.1	GSMUA_Achr10P...	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr4P21020_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr4P22520_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr8P20610_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr9P10700_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr9P25550_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr10P...	AT3G61830.1	22096563
AT1G19850.1	GSMUA_Achr2P19760_001	AT3G61830.1	22096563
AT1G19850.1	GSMUA_Achr7P24330_001	AT3G61830.1	22096563
AT1G19850.1	GSMUA_AchrUn_...	AT3G61830.1	22096563
AT1G19850.1	GSMUA_Achr11P...	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr2P12630_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr4P05200_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr4P21030_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr4P22530_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr5P03110_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr8P20620_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr9P10690_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr9P24330_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr11P...	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr2P12630_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr4P05200_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr4P21030_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr4P22530_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr5P03110_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr8P20620_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr9P10690_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr9P24330_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr11P...	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr2P12630_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr4P05200_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr4P21030_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr4P22530_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr5P03110_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr8P20620_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr9P10690_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr9P24330_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr9P26900_001	AT4G32280.1	21734647
AT1G19850.1	GSMUA_Achr9P26910_001	AT4G32280.1	21734647
AT1G19850.1	GSMUA_Achr3P16300_001	AT5G25890.1	21734647
AT1G19850.1	GSMUA_Achr5P09310_001	AT5G25890.1	21734647
AT1G19850.1	GSMUA_Achr7P13680_001	AT5G25890.1	21734647
AT1G19850.1	GSMUA_AchrUn_...	AT5G25890.1	21734647
AT1G19850.1	GSMUA_Achr3P16300_001	AT5G25890.1	22096563
AT1G19850.1	GSMUA_Achr5P09310_001	AT5G25890.1	22096563
AT1G19850.1	GSMUA_Achr7P13680_001	AT5G25890.1	22096563
AT1G19850.1	GSMUA_AchrUn_...	AT5G25890.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P20040_001	Banana	nucleus	57.88	71.87
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	72.09	66.67
Bra025775.1-P	Field mustard	nucleus	31.82	65.74
GSMUA_Achr6P36980_001	Banana	nucleus	57.67	65.27
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	17.61	57.19
Bra016492.1-P	Field mustard	nucleus	40.16	46.65
CDY62586	Canola	nucleus	40.27	46.22
CDX83741	Canola	nucleus	40.06	45.98
CDY61164	Canola	nucleus	40.58	45.76
Os04t0664400-01	Rice	nucleus	42.95	45.33
Bra012190.1-P	Field mustard	nucleus	40.27	45.1
CDY01393	Canola	nucleus	40.16	45.09
EES13038	Sorghum	nucleus	43.87	45.03
CDY29392	Canola	nucleus	40.37	44.75
TraesCS2B01G519200.2	Wheat	nucleus	43.98	44.71
TraesCS2D01G491200.2	Wheat	nucleus	43.87	44.61
TraesCS2A01G491000.1	Wheat	nucleus	43.87	44.61
HORVU2Hr1G109650.18	Barley	nucleus	43.77	44.41
Zm00001d001945_P002	Maize	nucleus	43.36	44.41
AT1G19850.1	Thale cress	nucleus	41.19	44.35
CDY39348	Canola	nucleus	40.06	44.25
KRH17404	Soybean	nucleus	41.92	43.76
VIT_18s0001g13930.t01	Wine grape	nucleus	42.74	43.55
Zm00001d026540_P002	Maize	nucleus	42.95	43.48
Solyc04g081240.2.1	Tomato	nucleus	41.61	43.44
PGSC0003DMT400009660	Potato	nucleus	41.3	43.16
KRH05923	Soybean	nucleus	41.4	43.09
GSMUA_AchrUn_...	Banana	mitochondrion	22.35	42.47
GSMUA_Achr3P10240_001	Banana	nucleus	25.33	39.68
GSMUA_Achr5P02450_001	Banana	nucleus	32.75	38.41
GSMUA_Achr3P23290_001	Banana	nucleus	32.34	38.29
GSMUA_Achr5P26580_001	Banana	nucleus	31.82	38.29
GSMUA_Achr11P...	Banana	nucleus	32.54	38.12
GSMUA_Achr4P25960_001	Banana	nucleus	31.31	37.95
GSMUA_Achr11P...	Banana	nucleus	31.2	37.41
GSMUA_Achr6P19850_001	Banana	nucleus	32.44	36.84
GSMUA_Achr9P18170_001	Banana	nucleus	31.31	35.6
GSMUA_Achr9P08310_001	Banana	vacuole	17.71	35.32
GSMUA_Achr9P14090_001	Banana	nucleus	33.06	35.27
GSMUA_Achr5P00590_001	Banana	nucleus	32.65	34.87
GSMUA_Achr11P...	Banana	nucleus	32.54	34.61
GSMUA_Achr1P08230_001	Banana	mitochondrion	23.07	33.73
GSMUA_Achr3P05460_001	Banana	nucleus	32.75	32.68
GSMUA_AchrUn_...	Banana	nucleus	21.22	32.44
GSMUA_Achr6P07390_001	Banana	nucleus	21.83	32.37
GSMUA_Achr10P...	Banana	nucleus	22.35	32.2
GSMUA_Achr6P01740_001	Banana	nucleus	34.19	31.95
GSMUA_Achr2P19760_001	Banana	nucleus	21.83	31.74
GSMUA_Achr10P...	Banana	nucleus	21.63	31.48
GSMUA_Achr6P12780_001	Banana	nucleus	22.55	31.47
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	22.55	31.42
GSMUA_Achr7P24330_001	Banana	nucleus	21.52	31.38
GSMUA_Achr5P05010_001	Banana	nucleus	27.81	31.0
GSMUA_Achr8P23850_001	Banana	nucleus	33.68	30.65
GSMUA_Achr6P08090_001	Banana	nucleus	24.92	29.37
GSMUA_Achr10P...	Banana	nucleus	23.89	28.16
GSMUA_Achr6P16450_001	Banana	nucleus	24.72	27.49
GSMUA_AchrUn_...	Banana	nucleus	24.82	27.26
GSMUA_Achr8P13620_001	Banana	nucleus	12.36	24.79

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G20000_001
EnsemblPlants:GSMUA_Achr1P20000_001	EnsemblPlants:GSMUA_Achr1T20000_001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0S1F8
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF10	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000296F59C
SEG:seg	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G20000_001]

Coordinates

chr1:-:15004872..15018485

Molecular Weight (calculated)

107789.0 Da

IEP (calculated)

6.378

GRAVY (calculated)

-0.195

Length

971 amino acids

Sequence
(BLAST)

001: MSATGADTKP EEGETAAVAP AAGEVLYCGG TNWDMLGRMG APNAANLVSP TRLRPLVGVD IRFVASGCIC GLKNAAALLD EMKLLGEVPS KPSARKVLNS
101: ELWHACAGPL VSLPQPGSLV YYFPQGHIEQ VTSSTRKMAN SRIPSYTDLP SQFMCQVRNV TLHADKETDE IYAQMTLQPV TSENDVFPIP DLGHTRCKHP
201: TEFFCKILTV SDTSKHGGFS VPRRAAEKLC PQLDYSMQPP NQELIVRDLH DNLWTFRHIY RGQPKRHLLT TGWSLFVGAK KLKAVDSIKQ CRSLSPNDLR
301: HFSRISLAGL SIHSVAKPSL KSETNEMCSA CRDENSQLLL GVRCANRKLT ALTSSVLSTD SMHIGVLAAA AHAAASRSPF TVLYNPRACP SEFIIPMTKY
401: HKAAYTQVSI GMRFGMMFET EVSSKRRLYM GTIVGISDYD PVRWPNSRWR NLQVEWYEHG YGERPDRVSL WEIETPESIF AFPNVTSSLK RQCLPGYVAH
501: ILVPRNFILF NNALKFLSNI LFQNTAQYNF SFFCGHLARK GQEALALRFT GIEDTRLMCA VEIFPISYVP NFPTFAIVPF QQSLHHEVLF ICTSDISGPA
601: INNQFVNLNP FTNPTEDGNV DTQHFFAGFG SENFSRLLNK PCNPNCDGLL GHHQSIYAGI LQNVRSCELS RSFSVMPALH TMGSSTQREV VTTAAMQQKQ
701: HFSTAENAAT SSADLSSMAN PNNFEPTETF QLSCISESGT PQCITTDIQE YFGTQLNSLG DELLVQGILS SEVHDLDVQG DCTVLQGVSN SYGIMDLLEE
801: CNNQVMDGLS PIVSHITSTR MTDSVFSLQD VPDSSAGTSS AIIAMNDCSL YQGSRKQACQ QPLRTYTKVQ KVGSVGRSID VTRFSNYYEL RSAVACMFGL
901: EGQLDDPRGS EWKLVYIDYE NDVLQVGDDP WEEFINCVKC IRILSPYEVQ KMSQEGMQLM DGFAWFNWCG F

Best Arabidopsis Sequence Match ( AT1G19850.1 )
(BLAST)

001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS

Arabidopsis Description

ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.