Factsheet for Bra012190.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001598.1-P
Bra001670.1-P
Bra001900.1-P
Bra007632.1-P
Bra009867.1-P
Bra011332.1-P
Bra012190.1-P
Bra014419.1-P
Bra015298.1-P
Bra016492.1-P
Bra018993.1-P
Bra021117.1-P
Bra021257.1-P
Bra022224.1-P
Bra023958.1-P
Bra025775.1-P
Bra026166.1-P
Bra027232.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra035427.1-P
Bra036557.1-P
Bra039732.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19850.1	Bra015298.1-P	AT1G04250.1	21734647
AT1G19850.1	Bra030560.1-P	AT1G04250.1	21734647
AT1G19850.1	Bra032520.1-P	AT1G04250.1	21734647
AT1G19850.1	Bra026166.1-P	AT1G15050.1	21734647
AT1G19850.1	Bra012190.1-P	AT1G19850.1	14729917
AT1G19850.1	Bra016492.1-P	AT1G19850.1	14729917
AT1G19850.1	Bra025775.1-P	AT1G19850.1	14729917
AT1G19850.1	Bra012190.1-P	AT1G19850.1	21734647
AT1G19850.1	Bra016492.1-P	AT1G19850.1	21734647
AT1G19850.1	Bra025775.1-P	AT1G19850.1	21734647
AT1G19850.1	Bra012190.1-P	AT1G19850.1	22096563
AT1G19850.1	Bra016492.1-P	AT1G19850.1	22096563
AT1G19850.1	Bra025775.1-P	AT1G19850.1	22096563
AT1G19850.1	Bra012190.1-P	AT1G19850.1	24485461
AT1G19850.1	Bra016492.1-P	AT1G19850.1	24485461
AT1G19850.1	Bra025775.1-P	AT1G19850.1	24485461
AT1G19850.1	Bra018993.1-P	AT1G52830.1	14729917
AT1G19850.1	Bra035427.1-P	AT1G59750.1	22096563
AT1G19850.1	Bra001598.1-P	AT3G15540.1	14729917
AT1G19850.1	Bra021117.1-P	AT3G15540.1	14729917
AT1G19850.1	Bra027232.1-P	AT3G15540.1	14729917
AT1G19850.1	Bra001598.1-P	AT3G15540.1	22096563
AT1G19850.1	Bra021117.1-P	AT3G15540.1	22096563
AT1G19850.1	Bra027232.1-P	AT3G15540.1	22096563
AT1G19850.1	Bra001670.1-P	AT3G17600.1	21734647
AT1G19850.1	Bra021257.1-P	AT3G17600.1	21734647
AT1G19850.1	Bra022224.1-P	AT3G17600.1	21734647
AT1G19850.1	Bra001900.1-P	AT3G23050.1	21734647
AT1G19850.1	Bra033886.1-P	AT3G23050.1	21734647
AT1G19850.1	Bra007632.1-P	AT3G61830.1	22096563
AT1G19850.1	Bra014419.1-P	AT3G61830.1	22096563
AT1G19850.1	Bra039732.1-P	AT4G14560.1	14729917
AT1G19850.1	Bra039732.1-P	AT4G14560.1	22096563
AT1G19850.1	Bra039732.1-P	AT4G14560.1	9342315
AT1G19850.1	Bra011332.1-P	AT4G32280.1	21734647
AT1G19850.1	Bra023958.1-P	AT4G32280.1	21734647
AT1G19850.1	Bra009867.1-P	AT5G25890.1	21734647
AT1G19850.1	Bra036557.1-P	AT5G25890.1	21734647
AT1G19850.1	Bra009867.1-P	AT5G25890.1	22096563
AT1G19850.1	Bra036557.1-P	AT5G25890.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01393	Canola	nucleus	99.42	99.65
Bra025775.1-P	Field mustard	nucleus	51.79	95.53
Bra016492.1-P	Field mustard	nucleus	83.97	87.08
AT1G19850.1	Thale cress	nucleus	89.62	86.14
VIT_18s0001g13930.t01	Wine grape	nucleus	63.67	57.92
Solyc04g081240.2.1	Tomato	nucleus	61.13	56.99
KRH17404	Soybean	nucleus	61.13	56.99
PGSC0003DMT400009660	Potato	nucleus	61.02	56.94
KRH05923	Soybean	nucleus	61.13	56.81
GSMUA_Achr1P20040_001	Banana	nucleus	45.56	50.51
GSMUA_Achr6P36980_001	Banana	nucleus	44.87	45.34
EES13038	Sorghum	nucleus	46.37	42.49
Os04t0664400-01	Rice	nucleus	44.64	42.07
TraesCS2B01G519200.2	Wheat	nucleus	46.14	41.88
TraesCS2D01G491200.2	Wheat	nucleus	46.14	41.88
TraesCS2A01G491000.1	Wheat	nucleus	46.02	41.78
HORVU2Hr1G109650.18	Barley	nucleus	45.91	41.59
Zm00001d001945_P002	Maize	nucleus	45.33	41.46
Zm00001d026540_P002	Maize	nucleus	45.56	41.19
GSMUA_Achr1P20000_001	Banana	nucleus	45.1	40.27
Bra014419.1-P	Field mustard	nucleus	25.14	39.28
Bra004530.1-P	Field mustard	nucleus	25.61	38.01
Bra010776.1-P	Field mustard	nucleus	36.45	37.98
Bra004125.1-P	Field mustard	nucleus	33.91	37.69
Bra013748.1-P	Field mustard	nucleus	26.07	37.54
Bra028110.1-P	Field mustard	nucleus	35.29	36.26
Bra019255.1-P	Field mustard	nucleus	25.49	35.47
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	42.45	35.05
Bra035427.1-P	Field mustard	nucleus	26.18	34.14
Bra034234.1-P	Field mustard	nucleus	20.88	33.46
Bra016517.1-P	Field mustard	nucleus	38.75	33.27
Bra025720.1-P	Field mustard	nucleus	40.14	33.17
Bra020125.1-P	Field mustard	nucleus	40.95	32.27
Bra027944.1-P	Field mustard	nucleus	19.26	30.42
Bra002479.1-P	Field mustard	nucleus	26.18	29.95
Bra010048.1-P	Field mustard	nucleus	28.84	29.38
Bra018124.1-P	Field mustard	nucleus	18.69	29.19
Bra035910.1-P	Field mustard	nucleus	28.03	27.36
Bra017362.1-P	Field mustard	nucleus	16.95	27.22
Bra002327.1-P	Field mustard	nucleus	40.02	24.11
Bra007632.1-P	Field mustard	nucleus	25.95	21.33

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01299	ProteinID:AFD01299.1
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra012190	EnsemblPlants:Bra012190.1	EnsemblPlants:Bra012190.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	UniProt:H9B4C6	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EMBL:JN979465	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF10	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000253578D	SEG:seg	:	:

Description

AT1G19850 (E=0.0) MP, ARF5, IAA24 | MP (MONOPTEROS); transcription factor

Coordinates

chrA07:-:9401528..9405186

Molecular Weight (calculated)

96103.6 Da

IEP (calculated)

6.181

GRAVY (calculated)

-0.441

Length

867 amino acids

Sequence
(BLAST)

001: MMASLACVED KMKTNGLVNG GTTTTTPQST LLEEMKLLKD QSGTRKPVIN SELWHACAGP LVTLPQVGSL VYYFPQGHSE QVAVSTRRSA TTQVPNYPNL
101: PSQLMCQVHN VTLHADKDSD EIYAQMSLQP VHSERDVFPV PEFGLLRGSK HPSEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYTAQ PPTQELVVRD
201: LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFYNPRA
301: CPAEFVIPIA KYRKAICGSQ LSVSMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWAGSK WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG
401: LKRQLHPSYF AGETEWGSLI KRPFIRVSDS TNGILPYASF PNMASEQLMR MMMRPHNSNS NNQNATTSFM SEMQQNVLMR QGGLLGDMNM QQPPMVQQVQ
501: PESKLTVNPS ASNTSGQEQN LPTQSMHAPS KSEKPTLSGC SSGRVSHGTE QQTMDQANQV CNEEKVNELM QKPVALSPCP DISQQIYPPT NGFSFLETEE
601: LSSQVSSFQS LAGSYKQPLM DSSAVVLPDT TNSSLFHDVW DNQLNGLKFD QFSPLMQQDL YGNNSTNSNI LDPPPLSNTV LDDFCAIKET DFNCLVGNNN
701: NNSTSFTQDV QSQITSASFA DNSGGTGTSS SNVDFDDSSL LQNSKGSWQQ KLATPRVRTY TKVQKTGSVG RSIDVTSFRD YKELKSAIEC MFGLEGLLTR
801: PQSSGWKLVY VDYESDVLLV GDDPWEEFVG CVKCIRILSP TEVQQMSEEG MKLLNSACIN DLKTSVP

Best Arabidopsis Sequence Match ( AT1G19850.1 )
(BLAST)

001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS

Arabidopsis Description

ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.