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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001598.1-P
Bra001634.1-P
Bra001670.1-P
Bra002479.1-P
Bra003518.1-P nucleus
Bra007720.1-P nucleus
Bra011332.1-P
Bra011955.1-P
Bra012190.1-P
Bra013748.1-P
Bra014303.1-P
Bra014378.1-P nucleus
Bra015298.1-P
Bra016492.1-P
Bra018938.1-P
Bra019255.1-P
Bra021117.1-P
Bra021184.1-P
Bra021257.1-P
Bra022164.1-P
Bra022224.1-P
Bra023958.1-P
Bra024406.1-P
Bra025775.1-P
Bra027232.1-P
Bra027504.1-P
Bra030560.1-P
Bra032520.1-P
Bra035185.1-P
Bra037824.1-P
Bra039732.1-P
Bra040122.1-P
Bra040398.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04250.1 Bra015298.1-P AT1G04250.1 21734647
AT1G04250.1 Bra030560.1-P AT1G04250.1 21734647
AT1G04250.1 Bra032520.1-P AT1G04250.1 21734647
AT1G04250.1 Bra012190.1-P AT1G19850.1 22096563
AT1G04250.1 Bra016492.1-P AT1G19850.1 22096563
AT1G04250.1 Bra025775.1-P AT1G19850.1 22096563
AT1G04250.1 Bra014303.1-P AT1G51950.1 21734647
AT1G04250.1 Bra018938.1-P AT1G51950.1 21734647
AT1G04250.1 Bra035185.1-P AT1G80390.1 21734647
AT1G04250.1 Bra011955.1-P AT2G28350.1 21734647
AT1G04250.1 Bra040122.1-P AT3G04730.1 21734647
AT1G04250.1 Bra040398.1-P AT3G04730.1 21734647
AT1G04250.1 Bra001598.1-P AT3G15540.1 21734647
AT1G04250.1 Bra021117.1-P AT3G15540.1 21734647
AT1G04250.1 Bra027232.1-P AT3G15540.1 21734647
AT1G04250.1 Bra001634.1-P AT3G16500.1 21734647
AT1G04250.1 Bra021184.1-P AT3G16500.1 21734647
AT1G04250.1 Bra022164.1-P AT3G16500.1 21734647
AT1G04250.1 Bra001670.1-P AT3G17600.1 21734647
AT1G04250.1 Bra021257.1-P AT3G17600.1 21734647
AT1G04250.1 Bra022224.1-P AT3G17600.1 21734647
AT1G04250.1 Bra003518.1-P AT3G62980.1 11713520
AT1G04250.1 Bra007720.1-P AT3G62980.1 11713520
AT1G04250.1 Bra014378.1-P AT3G62980.1 11713520
AT1G04250.1 Bra003518.1-P AT3G62980.1 22912871
AT1G04250.1 Bra007720.1-P AT3G62980.1 22912871
AT1G04250.1 Bra014378.1-P AT3G62980.1 22912871
AT1G04250.1 Bra003518.1-P AT3G62980.1 22912871
AT1G04250.1 Bra007720.1-P AT3G62980.1 22912871
AT1G04250.1 Bra014378.1-P AT3G62980.1 22912871
AT1G04250.1 Bra039732.1-P AT4G14560.1 9342315
AT1G04250.1 Bra013748.1-P AT4G23980.1 21734647
AT1G04250.1 Bra019255.1-P AT4G23980.1 21734647
AT1G04250.1 Bra011332.1-P AT4G32280.1 21734647
AT1G04250.1 Bra023958.1-P AT4G32280.1 21734647
AT1G04250.1 Bra027504.1-P AT5G43700.1 21734647
AT1G04250.1 Bra002479.1-P AT5G60450.1 21734647
AT1G04250.1 Bra024406.1-P AT5G65670.1 21734647
AT1G04250.1 Bra037824.1-P AT5G65670.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX89832 Canola nucleus 99.55 99.55
CDY18214 Canola nucleus 96.88 96.88
Bra032520.1-P Field mustard nucleus 87.95 86.78
Bra030560.1-P Field mustard nucleus 87.95 86.03
AT1G04250.1 Thale cress cytosol, nucleus, plastid 86.16 84.28
Bra039855.1-P Field mustard nucleus 67.86 65.24
KRH34377 Soybean nucleus 69.2 64.85
Solyc09g083290.2.1 Tomato nucleus 66.52 63.14
VIT_05s0020g04690.t01 Wine grape cytosol, nucleus, plastid 67.86 62.55
Bra001900.1-P Field mustard cytosol, nucleus, plastid 66.07 62.45
PGSC0003DMT400015610 Potato nucleus 66.07 62.18
Bra033886.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 66.07 61.16
Bra040398.1-P Field mustard nucleus 60.71 58.87
GSMUA_Achr10P... Banana nucleus 62.95 58.51
GSMUA_Achr9P25550_001 Banana nucleus 61.61 56.79
Bra040122.1-P Field mustard nucleus 56.25 56.0
GSMUA_Achr8P20610_001 Banana nucleus 60.71 55.74
GSMUA_Achr4P21020_001 Banana nucleus 61.16 55.24
Bra001899.1-P Field mustard nucleus 40.62 53.22
GSMUA_Achr9P10700_001 Banana nucleus 57.14 53.11
Bra033890.1-P Field mustard nucleus 40.62 52.91
Bra023771.1-P Field mustard nucleus 40.18 52.63
EER90896 Sorghum nucleus 53.57 51.06
Zm00001d033976_P002 Maize nucleus 54.02 51.05
Os03t0742900-01 Rice vacuole 53.57 50.85
TraesCS5D01G069300.1 Wheat nucleus 57.14 50.79
TraesCS5B01G058500.1 Wheat nucleus 57.14 50.79
TraesCS5A01G058600.1 Wheat nucleus 57.14 50.59
Bra015297.1-P Field mustard cytosol, nucleus, plastid 41.96 50.54
TraesCS5D01G392000.1 Wheat nucleus 51.79 50.0
Os03t0633500-01 Rice cytosol 51.79 49.79
TraesCS5A01G382600.1 Wheat nucleus 51.79 49.79
Bra037824.1-P Field mustard plastid 43.3 49.74
TraesCS5B01G386800.1 Wheat nucleus 51.79 49.57
Zm00001d013302_P002 Maize nucleus 50.45 49.56
Bra039732.1-P Field mustard nucleus 37.5 49.12
HORVU5Hr1G094220.1 Barley nucleus 51.79 48.95
Bra026755.1-P Field mustard nucleus 33.93 48.72
GSMUA_Achr4P22520_001 Banana nucleus 54.46 48.22
Bra027504.1-P Field mustard nucleus 41.07 48.17
EES17334 Sorghum cytosol 59.38 47.33
Bra032521.1-P Field mustard nucleus 37.95 47.22
KRG92429 Soybean cytosol, nucleus, plastid 69.64 47.13
Os12t0601300-01 Rice nucleus 58.04 46.93
TraesCS5B01G381900.1 Wheat cytosol, mitochondrion, nucleus 52.68 46.64
HORVU5Hr1G014300.4 Barley nucleus 57.14 46.38
OQU91311 Sorghum cytosol, mitochondrion, nucleus 54.46 46.21
Bra001598.1-P Field mustard nucleus 39.73 45.88
Bra027232.1-P Field mustard nucleus 38.84 44.85
Bra024406.1-P Field mustard nucleus 45.98 44.21
Bra021117.1-P Field mustard cytosol, nucleus, plastid 38.39 43.65
HORVU5Hr1G093580.2 Barley cytosol, nucleus, peroxisome 50.0 39.86
Bra018993.1-P Field mustard nucleus 35.27 38.92
Bra030219.1-P Field mustard nucleus 45.09 37.97
Bra011082.1-P Field mustard nucleus 48.66 37.59
Bra031850.1-P Field mustard mitochondrion 48.21 36.99
TraesCS5D01G388300.2 Wheat cytosol 51.34 36.51
Zm00001d041416_P001 Maize nucleus 55.8 36.34
TraesCS5A01G378300.2 Wheat cytosol, mitochondrion, nucleus 49.11 36.07
Protein Annotations
Gene3D:3.10.20.90MapMan:35.1InterPro:AUX/IAA_domInterPro:AUX_IAAEnsemblPlantsGene:Bra015298EnsemblPlants:Bra015298.1
EnsemblPlants:Bra015298.1-PGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009734
GO:GO:0009987InterPro:IPR000270UniProt:M4DFM5InterPro:PB1_domPFAM:PF02309PFscan:PS51745
PANTHER:PTHR31734PANTHER:PTHR31734:SF28SUPFAM:SSF54277UniParc:UPI000254409D::
Description
AT1G04250 (E=5e-111) AXR3, IAA17 | AXR3 (AUXIN RESISTANT 3); transcription factor
Coordinates
chrA10:-:2598338..2599728
Molecular Weight (calculated)
24894.1 Da
IEP (calculated)
8.695
GRAVY (calculated)
-0.487
Length
224 amino acids
Sequence
(BLAST)
001: MMGNIDLNLQ ETELCLGLPG GMTGTKRGFS ETVDLKLNLN NEPESKEVSK THDVVISVSK EKNTCPKDPT KPPAKAQVVG WPPVRSYRKN VMGSCQKSNG
101: VTETAVFVKV SMDGAPYLRK VDLKMYKSYD ELSNALSNMF GSFTMGKNGG EEGMIDFMNE RKVRDLVNSW DYVPSYEDKD GVWMLVGDVP WPMFVDTCKR
201: LRLMKGSDAI GLAPRAMGKC KSRT
Best Arabidopsis Sequence Match ( AT1G04250.1 )
(BLAST)
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.