Factsheet for Bra002479.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002479.1-P
Bra012190.1-P
Bra016492.1-P
Bra017362.1-P
Bra018124.1-P
Bra018993.1-P
Bra024406.1-P
Bra025775.1-P
Bra026755.1-P
Bra027944.1-P
Bra034234.1-P
Bra035427.1-P
Bra037824.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60450.1	Bra026755.1-P	AT1G15580.1	21734647
AT5G60450.1	Bra012190.1-P	AT1G19850.1	22096563
AT5G60450.1	Bra016492.1-P	AT1G19850.1	22096563
AT5G60450.1	Bra025775.1-P	AT1G19850.1	22096563
AT5G60450.1	Bra017362.1-P	AT1G34310.1	22096563
AT5G60450.1	Bra018124.1-P	AT1G34310.1	22096563
AT5G60450.1	Bra027944.1-P	AT1G34310.1	22096563
AT5G60450.1	Bra034234.1-P	AT1G34310.1	22096563
AT5G60450.1	Bra018993.1-P	AT1G52830.1	22096563
AT5G60450.1	Bra035427.1-P	AT1G59750.1	22096563
AT5G60450.1	Bra002479.1-P	AT5G60450.1	22096563
AT5G60450.1	Bra024406.1-P	AT5G65670.1	22096563
AT5G60450.1	Bra037824.1-P	AT5G65670.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31545	Canola	nucleus	99.21	99.34
AT5G60450.1	Thale cress	nucleus	86.94	83.63
KRH22924	Soybean	nucleus	34.3	71.23
VIT_06s0004g03130.t01	Wine grape	nucleus	65.04	61.78
KRH24914	Soybean	nucleus	61.61	58.96
KRG89021	Soybean	nucleus	61.48	58.84
KRH26391	Soybean	nucleus	61.61	58.45
PGSC0003DMT400020839	Potato	nucleus	61.74	57.71
Solyc11g069190.1.1	Tomato	nucleus	61.48	57.46
Bra025775.1-P	Field mustard	nucleus	26.25	42.34
Bra014419.1-P	Field mustard	nucleus	29.55	40.36
Bra004530.1-P	Field mustard	nucleus	29.95	38.87
Bra013748.1-P	Field mustard	nucleus	30.21	38.04
Bra019255.1-P	Field mustard	nucleus	30.74	37.4
Bra035427.1-P	Field mustard	nucleus	31.93	36.39
Bra034234.1-P	Field mustard	nucleus	23.22	32.53
Bra010048.1-P	Field mustard	nucleus	36.28	32.31
Bra027944.1-P	Field mustard	nucleus	22.96	31.69
Bra004125.1-P	Field mustard	nucleus	31.79	30.9
Bra035910.1-P	Field mustard	nucleus	35.49	30.29
Bra018124.1-P	Field mustard	nucleus	22.03	30.09
Bra028110.1-P	Field mustard	nucleus	32.32	29.03
Bra010776.1-P	Field mustard	nucleus	31.13	28.37
Bra017362.1-P	Field mustard	nucleus	20.05	28.15
Bra016492.1-P	Field mustard	nucleus	29.68	26.91
Bra012190.1-P	Field mustard	nucleus	29.95	26.18
Bra025720.1-P	Field mustard	nucleus	32.59	23.55
Bra016517.1-P	Field mustard	nucleus	31.13	23.37
Bra020125.1-P	Field mustard	nucleus	31.66	21.82
Bra007632.1-P	Field mustard	nucleus	29.29	21.04
Bra002327.1-P	Field mustard	nucleus	31.4	16.54

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01298	ProteinID:AFD01298.1
InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra002479	EnsemblPlants:Bra002479.1	EnsemblPlants:Bra002479.1-P	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009791	GO:GO:0009987	GO:GO:0010050
GO:GO:0010158	GO:GO:0030154	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EMBL:JN979464
UniProt:M4CE48	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF20	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI00025440D7
SEG:seg	:	:	:	:	:

Description

AT5G60450 (E=0.0) ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4); transcription factor

Coordinates

chrA10:-:9301025..9304452

Molecular Weight (calculated)

83800.8 Da

IEP (calculated)

6.994

GRAVY (calculated)

-0.478

Length

758 amino acids

Sequence
(BLAST)

001: MEFDLNTEFA EVEEEENDKG KRLGVSPSSS SSCSSGSSSS SSTTASASSI YSELWHACAG PLTSLPKKGN VVVYFPQGHL EQGAMVSYSS PLDIPKLDLS
101: PQIFCRVANV HLLANKETDE VYTQVTLLPL QELSVLNGEG KEVRELGGDE EKNGSSSVKK TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FAPLDYKQQR
201: PSQELIAKDL HGVEWKFRHI YRGQPRRHLL TTGWSIFVSQ KSLVSGDAVL FLRDENGELR LGIRRSARPR NGLPDSIIQK YSSSSILSLV ANAVSNKSMF
301: HVFYSPRATH SEFVIPYEKY ITSIKNPICI GTRFRMRFEM DDSPERRCAG VVTGVCDMDP YRWPNSKWRC LLVRWDESFM SDHQERVSPW EIDPSGSLPP
401: LSIQSSPRPK RPWAGLLGTT TPQGNPITER GGFLDFEESV RPSKVLQGQE NIGSATSSSP LQGFDVMNRR ILDFAGMQQS HANPLLLSSR VKDRFGEFVD
501: STSLDLDRFP RVLQGQEICS LRSFPQIAGL SPGKASLGYN GAFAYQANKT SFYPLASQGI RSSHIPYQSA GDKSLSHPSS RKFDAQGEGG GLPKIDMMGA
601: EKGREVNMNA STTGCKLFGF SLPVGTPASN QQSSSKRICT KVHKQGSLVG RAIDLSRLNG YNVLLTEFER LFNMEGLLRD PEKGWRILYT DSENDMMVVG
701: DDPWHDFCSV VLKIHLYTKE EVENGNDDNR SCLEQAALMM EASKSSSVSQ PDSSPTGH

Best Arabidopsis Sequence Match ( AT5G60450.1 )
(BLAST)

001: MEFDLNTEIA EVEEEENDDV GVGVGGGTRI DKGRLGISPS SSSSCSSGSS SSSSSTGSAS SIYSELWHAC AGPLTCLPKK GNVVVYFPQG HLEQDAMVSY
101: SSPLEIPKFD LNPQIVCRVV NVQLLANKDT DEVYTQVTLL PLQEFSMLNG EGKEVKELGG EEERNGSSSV KRTPHMFCKT LTASDTSTHG GFSVPRRAAE
201: DCFAPLDYKQ QRPSQELIAK DLHGVEWKFR HIYRGQPRRH LLTTGWSIFV SQKNLVSGDA VLFLRDEGGE LRLGIRRAAR PRNGLPDSII EKNSCSNILS
301: LVANAVSTKS MFHVFYSPRA THAEFVIPYE KYITSIRSPV CIGTRFRMRF EMDDSPERRC AGVVTGVCDL DPYRWPNSKW RCLLVRWDES FVSDHQERVS
401: PWEIDPSVSL PHLSIQSSPR PKRPWAGLLD TTPPGNPITK RGGFLDFEES VRPSKVLQGQ ENIGSASPSQ GFDVMNRRIL DFAMQSHANP VLVSSRVKDR
501: FGEFVDATGV NPACSGVMDL DRFPRVLQGQ EICSLKSFPQ FAGFSPAAAP NPFAYQANKS SYYPLALHGI RSTHVPYQNP YNAGNQSSGP PSRAINFGEE
601: TRKFDAQNEG GLPNNVTADL PFKIDMMGKQ KGSELNMNAS SGCKLFGFSL PVETPASKPQ SSSKRICTKV HKQGSQVGRA IDLSRLNGYD DLLMELERLF
701: NMEGLLRDPE KGWRILYTDS ENDMMVVGDD PWHDFCNVVW KIHLYTKEEV ENANDDNKSC LEQAALMMEA SKSSSVSQPD SSPTITRV

Arabidopsis Description

ARF4Auxin response factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.