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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001670.1-P
Bra001900.1-P
Bra002327.1-P
Bra009867.1-P
Bra010048.1-P
Bra012190.1-P
Bra013748.1-P
Bra015298.1-P
Bra016492.1-P
Bra017362.1-P
Bra018124.1-P
Bra019255.1-P
Bra020125.1-P
Bra021257.1-P
Bra022224.1-P
Bra025775.1-P
Bra026755.1-P
Bra027944.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra034234.1-P
Bra035427.1-P
Bra035910.1-P
Bra036557.1-P
Bra040122.1-P
Bra040398.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G34310.1 Bra012190.1-P AT1G19850.1 22096563
AT1G34310.1 Bra016492.1-P AT1G19850.1 22096563
AT1G34310.1 Bra025775.1-P AT1G19850.1 22096563
AT1G34310.1 Bra017362.1-P AT1G34310.1 22096563
AT1G34310.1 Bra018124.1-P AT1G34310.1 22096563
AT1G34310.1 Bra027944.1-P AT1G34310.1 22096563
AT1G34310.1 Bra034234.1-P AT1G34310.1 22096563
AT1G34310.1 Bra035427.1-P AT1G59750.1 22096563
AT1G34310.1 Bra001670.1-P AT3G17600.1 21734647
AT1G34310.1 Bra021257.1-P AT3G17600.1 21734647
AT1G34310.1 Bra022224.1-P AT3G17600.1 21734647
AT1G34310.1 Bra013748.1-P AT4G23980.1 22096563
AT1G34310.1 Bra019255.1-P AT4G23980.1 22096563
AT1G34310.1 Bra010048.1-P AT5G62000.1 21734647
AT1G34310.1 Bra035910.1-P AT5G62000.1 21734647
AT1G34390.1 Bra017362.1-P AT1G34310.1 21734647
AT1G34390.1 Bra018124.1-P AT1G34310.1 21734647
AT1G34390.1 Bra027944.1-P AT1G34310.1 21734647
AT1G34390.1 Bra034234.1-P AT1G34310.1 21734647
AT1G34390.1 Bra040476.1-P AT2G46990.1 21734647
AT1G34390.1 Bra040122.1-P AT3G04730.1 21734647
AT1G34390.1 Bra040398.1-P AT3G04730.1 21734647
AT1G34390.1 Bra001900.1-P AT3G23050.1 21734647
AT1G34390.1 Bra033886.1-P AT3G23050.1 21734647
AT1G34390.1 Bra009867.1-P AT5G25890.1 21734647
AT1G34390.1 Bra036557.1-P AT5G25890.1 21734647
AT1G35240.1 Bra015298.1-P AT1G04250.1 21734647
AT1G35240.1 Bra030560.1-P AT1G04250.1 21734647
AT1G35240.1 Bra032520.1-P AT1G04250.1 21734647
AT1G35240.1 Bra026755.1-P AT1G15580.1 21734647
AT1G35240.1 Bra002327.1-P AT5G20730.1 21734647
AT1G35240.1 Bra020125.1-P AT5G20730.1 21734647
AT1G35540.1 Bra026755.1-P AT1G15580.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY55738 Canola nucleus 98.89 98.89
Bra027944.1-P Field mustard nucleus 84.44 83.06
Bra018124.1-P Field mustard nucleus 72.96 70.99
Bra034234.1-P Field mustard nucleus 54.26 54.16
AT1G34390.1 Thale cress nucleus 50.74 45.82
AT1G34410.1 Thale cress nucleus 51.11 45.54
AT1G35240.1 Thale cress nucleus 49.81 45.44
AT1G34310.1 Thale cress nucleus 49.63 45.19
AT1G35520.1 Thale cress nucleus 49.63 45.19
AT1G35540.1 Thale cress nucleus 50.37 44.96
AT1G34170.3 Thale cress nucleus 44.07 43.59
Bra014419.1-P Field mustard nucleus 37.22 36.22
Bra013748.1-P Field mustard nucleus 39.63 35.55
Bra019255.1-P Field mustard nucleus 39.63 34.35
Bra004530.1-P Field mustard nucleus 36.67 33.9
VIT_02s0025g01740.t01 Wine grape nucleus 41.67 32.99
KRH49135 Soybean nucleus 38.33 31.17
KRH00001 Soybean nucleus 38.15 31.02
KRH65922 Soybean nucleus 39.63 30.97
KRH75716 Soybean nucleus 39.63 30.92
GSMUA_AchrUn_... Banana nucleus 36.11 30.71
Solyc08g008380.2.1 Tomato nucleus 38.33 30.31
PGSC0003DMT400031965 Potato nucleus 36.3 29.92
GSMUA_Achr10P... Banana nucleus 35.93 29.09
GSMUA_Achr2P19760_001 Banana nucleus 35.74 28.89
Solyc08g082630.2.1 Tomato nucleus 33.89 28.42
Bra035427.1-P Field mustard nucleus 34.81 28.27
GSMUA_Achr7P24330_001 Banana nucleus 34.63 28.08
Os01t0236300-01 Rice nucleus 33.7 26.04
Bra025775.1-P Field mustard nucleus 22.59 25.96
EES02172 Sorghum nucleus 32.41 25.44
Zm00001d039267_P005 Maize nucleus 31.85 24.86
Bra010048.1-P Field mustard nucleus 38.15 24.21
TraesCS3B01G190100.1 Wheat nucleus 33.33 23.75
TraesCS3D01G166700.1 Wheat nucleus 33.33 23.75
TraesCS3A01G159200.1 Wheat nucleus 33.33 23.72
HORVU3Hr1G032230.6 Barley nucleus, plastid 33.7 22.75
Bra035910.1-P Field mustard nucleus 37.04 22.52
Bra004125.1-P Field mustard nucleus 29.63 20.51
Bra002479.1-P Field mustard nucleus 28.15 20.05
Bra007632.1-P Field mustard nucleus 36.3 18.58
Bra028110.1-P Field mustard nucleus 28.89 18.48
Bra010776.1-P Field mustard nucleus 27.78 18.03
Bra016492.1-P Field mustard nucleus 27.04 17.46
Bra012190.1-P Field mustard nucleus 27.22 16.95
Bra016517.1-P Field mustard nucleus 29.07 15.54
Bra025720.1-P Field mustard nucleus 29.26 15.06
Bra020125.1-P Field mustard nucleus 27.59 13.55
Bra002327.1-P Field mustard nucleus 26.85 10.08
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90ProteinID:AFD01319ProteinID:AFD01319.1
InterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlantsGene:Bra017362EnsemblPlants:Bra017362.1EnsemblPlants:Bra017362.1-PInterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009725GO:GO:0009987
UniProt:H9B4E6InterPro:IPR000270InterPro:IPR003340InterPro:IPR015300EMBL:JN979485InterPro:PB1_dom
PFAM:PF06507PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF1SUPFAM:SSF101936SUPFAM:SSF54277
UniParc:UPI0002535826SEG:seg::::
Description
AT1G35240 (E=2e-088) ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20); transcription factor
Coordinates
chrA09:-:14612124..14615115
Molecular Weight (calculated)
61311.1 Da
IEP (calculated)
6.399
GRAVY (calculated)
-0.444
Length
540 amino acids
Sequence
(BLAST)
001: MASDQIMHVQ PEVLDIDETN NYLNGQLLKL CAGPLFDTPK VGEKLVTSIN DELCQLKPIF DIPSKICCNV FSINLKVENN TNDIYAEVAL LPDTSDVEIP
101: IPKNENNIQN INYFTKVLSA SDTCKTGGFV LYKRHAMECL PLLDMSQLTP SQEIIAKDIH GHKWSFKHTL RGENGESRVG ISRAAHQERN IPTSSISKQS
201: MHHGVVATAL NTIKNKCMFV VFYKPRSSQF LVNFDKFVDR VNNKFSIGSK FSMKFEGKDL NETRYNGTIV GVGDFSTHWK DSEWRSLKVQ WDGTATIPRP
301: DKVSPWEIEM LTQSSNISKS DYLKNKRQID VYEFGSKMWS PTLSQGQESG QPSIQSSMRY SFSTMYNEQM AQAMKETSTT TATTSCRLFG VDLVNPATTK
401: DPVEPIDSNK KLKISKIFED EKIDHVQARS HTKVHMEGVI ERTVDLTIFD GYSQLIDELE RLFDIKGELH MHNKWKMFFI YDDGDMMILG DDPWTKFCYM
501: AKEIFICSKK GVKIGIADNR FSEGDPTLTT TILPPDVNNN
Best Arabidopsis Sequence Match ( AT1G34390.1 )
(BLAST)
001: MESGNIVNAQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGEKIYYFP QGNIELVEAS TREELNELKP ICDLPSKLQC RVIAIQLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSGGFF VPKKHAIECL PPLDMSQPLP TQELLATDLH GNQWRFNHNY RGTPQRHLLT TGWNAFTTSK
201: KLVAGDVIVF VRGETGELRV GIRRAGHQQG NIPSSIISIE SMRHGVIASA KHAFDNQCMF IVVYKPRSSQ FIVSYDKFLD AVNNKFNVGS RFTMRFEGDD
301: FSERRYFGTI IGVSDFSPHW KCSEWRNLEV QWDEFASFSR PNKVSPWEIE HLMPALNVPR PSLLKNKRLR EVNEIGSSSS HLLPPILTQG QEIGQLSVAS
401: PMNISLTYRD TTEDVMNPSR LLMSYPVQPM PKLNYNNQMV TQIEENITTK TGTNFRLFGV SLVTPSVIKD PIEEIGSEIS KLTEGKKFGQ SQTLRSPTEI
501: QSKQFSSTRT CTKVQMQGVT IERAVDLSVL NGYDQLILEL EELFDLKGQL QTRNQWEIAF TDSDDDKMLV GDDPWPEFCN MVKKILIFKR GGQKLEVQ
Arabidopsis Description
ARF22Auxin response factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.