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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001598.1-P
Bra001634.1-P
Bra002479.1-P
Bra003484.1-P
Bra007632.1-P
Bra007661.1-P
Bra009867.1-P
Bra011082.1-P
Bra011332.1-P
Bra011955.1-P
Bra012190.1-P
Bra013748.1-P
Bra014411.1-P
Bra014419.1-P
Bra015289.1-P
Bra016492.1-P
Bra017362.1-P
Bra018124.1-P
Bra019255.1-P
Bra021117.1-P
Bra021184.1-P
Bra022164.1-P
Bra023958.1-P
Bra025775.1-P
Bra026166.1-P
Bra027232.1-P
Bra027504.1-P
Bra027944.1-P
Bra034234.1-P
Bra035427.1-P
Bra036557.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G23980.1 Bra015289.1-P AT1G04100.1 21734647
AT4G23980.1 Bra026166.1-P AT1G15050.1 21734647
AT4G23980.1 Bra012190.1-P AT1G19850.1 22096563
AT4G23980.1 Bra016492.1-P AT1G19850.1 22096563
AT4G23980.1 Bra025775.1-P AT1G19850.1 22096563
AT4G23980.1 Bra017362.1-P AT1G35240.1 21734647
AT4G23980.1 Bra018124.1-P AT1G35240.1 21734647
AT4G23980.1 Bra027944.1-P AT1G35240.1 21734647
AT4G23980.1 Bra034234.1-P AT1G35240.1 21734647
AT4G23980.1 Bra035427.1-P AT1G59750.1 22096563
AT4G23980.1 Bra011955.1-P AT2G28350.1 22096563
AT4G23980.1 Bra001598.1-P AT3G15540.1 22096563
AT4G23980.1 Bra021117.1-P AT3G15540.1 22096563
AT4G23980.1 Bra027232.1-P AT3G15540.1 22096563
AT4G23980.1 Bra001634.1-P AT3G16500.1 21734647
AT4G23980.1 Bra021184.1-P AT3G16500.1 21734647
AT4G23980.1 Bra022164.1-P AT3G16500.1 21734647
AT4G23980.1 Bra007632.1-P AT3G61830.1 22096563
AT4G23980.1 Bra014419.1-P AT3G61830.1 22096563
AT4G23980.1 Bra003484.1-P AT3G62100.1 21734647
AT4G23980.1 Bra007661.1-P AT3G62100.1 21734647
AT4G23980.1 Bra014411.1-P AT3G62100.1 21734647
AT4G23980.1 Bra013748.1-P AT4G23980.1 22096563
AT4G23980.1 Bra019255.1-P AT4G23980.1 22096563
AT4G23980.1 Bra011082.1-P AT4G29080.1 21734647
AT4G23980.1 Bra011332.1-P AT4G32280.1 21734647
AT4G23980.1 Bra023958.1-P AT4G32280.1 21734647
AT4G23980.1 Bra009867.1-P AT5G25890.1 21734647
AT4G23980.1 Bra036557.1-P AT5G25890.1 21734647
AT4G23980.1 Bra009867.1-P AT5G25890.1 22096563
AT4G23980.1 Bra036557.1-P AT5G25890.1 22096563
AT4G23980.1 Bra027504.1-P AT5G43700.1 21734647
AT4G23980.1 Bra002479.1-P AT5G60450.1 22096563
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY10978 Canola nucleus 99.52 99.2
Bra013748.1-P Field mustard nucleus 85.71 88.7
AT4G23980.1 Thale cress nucleus 86.52 84.48
VIT_02s0025g01740.t01 Wine grape nucleus 62.76 57.33
Bra014419.1-P Field mustard nucleus 50.88 57.12
Bra004530.1-P Field mustard nucleus 52.97 56.51
KRH65922 Soybean nucleus 61.8 55.72
KRH75716 Soybean nucleus 61.0 54.91
KRH00001 Soybean nucleus 58.11 54.52
KRH49135 Soybean nucleus 58.11 54.52
PGSC0003DMT400031965 Potato nucleus 54.9 52.21
Solyc08g082630.2.1 Tomato nucleus 53.93 52.17
GSMUA_Achr10P... Banana nucleus 55.06 51.42
Solyc08g008380.2.1 Tomato nucleus 56.18 51.24
GSMUA_Achr2P19760_001 Banana nucleus 54.9 51.2
GSMUA_Achr7P24330_001 Banana nucleus 54.09 50.6
GSMUA_AchrUn_... Banana nucleus 50.72 49.76
Bra034234.1-P Field mustard nucleus 39.33 45.29
Bra035427.1-P Field mustard nucleus 47.83 44.81
Bra027944.1-P Field mustard nucleus 38.36 43.53
Bra025775.1-P Field mustard nucleus 31.14 41.28
Bra018124.1-P Field mustard nucleus 36.28 40.72
Os01t0236300-01 Rice nucleus 45.43 40.49
EES02172 Sorghum nucleus 44.62 40.41
Bra017362.1-P Field mustard nucleus 34.35 39.63
Zm00001d039267_P005 Maize nucleus 41.89 37.72
Bra010048.1-P Field mustard nucleus 50.72 37.13
TraesCS3A01G159200.1 Wheat nucleus 44.62 36.63
TraesCS3D01G166700.1 Wheat nucleus 44.46 36.54
TraesCS3B01G190100.1 Wheat nucleus 44.46 36.54
Bra035910.1-P Field mustard nucleus 50.4 35.36
HORVU3Hr1G032230.6 Barley nucleus, plastid 43.66 34.0
Bra002479.1-P Field mustard nucleus 37.4 30.74
Bra007632.1-P Field mustard nucleus 51.2 30.24
Bra004125.1-P Field mustard nucleus 36.6 29.23
Bra028110.1-P Field mustard nucleus 36.28 26.78
Bra010776.1-P Field mustard nucleus 35.31 26.44
Bra016492.1-P Field mustard nucleus 35.31 26.32
Bra012190.1-P Field mustard nucleus 35.47 25.49
Bra016517.1-P Field mustard nucleus 35.96 22.18
Bra025720.1-P Field mustard nucleus 37.24 22.12
Bra020125.1-P Field mustard nucleus 36.92 20.91
Bra002327.1-P Field mustard nucleus 36.44 15.77
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90ProteinID:AFD01308ProteinID:AFD01308.1
InterPro:AUX/IAA_domInterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlantsGene:Bra019255EnsemblPlants:Bra019255.1EnsemblPlants:Bra019255.1-P
InterPro:DNA-bd_pseudobarrel_sfGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009719GO:GO:0009725GO:GO:0009734GO:GO:0009987InterPro:IPR000270InterPro:IPR003340
InterPro:IPR015300EMBL:JN979474UniProt:M4DRW2InterPro:PB1_domPFAM:PF02309PFAM:PF02362
PFAM:PF06507PFscan:PS50863PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF1SMART:SM01019
SUPFAM:SSF101936SUPFAM:SSF54277UniParc:UPI0002540F69SEG:seg::
Description
AT4G23980 (E=2e-290) ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); transcription factor
Coordinates
chrA03:+:25411636..25414715
Molecular Weight (calculated)
70261.0 Da
IEP (calculated)
6.721
GRAVY (calculated)
-0.618
Length
623 amino acids
Sequence
(BLAST)
001: MYGELWKLCA GPVVDVPQAA ERVFYFPQGH MEQLEASTQQ DLNAVKPTKP LFDLPPKILC RVMDVRLQAE KDTDEVYAQI MLMPEGTVDE PMSPDPSPPE
101: SQRPKVHSFS KVLTASDTST HGGFSVLRKH ATECLPPLDM TQQTPTQELV AEDVHGYQWK FKHIFRGQPR RHLLTTGWST FVTAKRLVAG DTFVFLRGEN
201: GELRVGVRRA NRQQTNMPSS VISSHSMHLG VLATACHATQ TRSMFTVYYK PRTSQFIISL NKYLEAMSNK FSVGIRFKMR FEGEDSPERR LSGTVGGGKD
301: CSTHWKDSNW RCLEVHWDEP ASISRPDKVS PWEIEPFVTS ENVPHSVMPK NKRPRHYSEV SALGKTASNL WSSALTQSHE FAQSCITSQR NSPQQCYRDA
401: TEDAKNSDWS ASPYSATLNN QMVFPVEQKK PETTASYRLF GIDLLSSSIP ATEEKTAPTL PINITKPTPD SNSDPKSEVS KLSEEKKQEP AQASSKEVQS
501: KEISSTRSRT KVQMQGVPVG RAVDLTVLNG YSELIDDLEK LFDIEGELKS RNQWEIVFTD DEGDMMLVGD DPWPEFCNMV KRIFIWSKEE VKKMTPGNQL
601: RKLLTEVDTT LTTTISKTEN HSN
Best Arabidopsis Sequence Match ( AT4G23980.2 )
(BLAST)
001: MANRGGEYLY DELWKLCAGP LVDVPQAQER VYYFPQGHME QLEASTQQVD LNTMKPLFVL PPKILCNVMN VSLQAEKDTD EVYAQITLIP VGTEVDEPMS
101: PDPSPPELQR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF
201: VFLRGENGEL RVGVRRANLQ QSSMPSSVIS SHSMHLGVLA TARHATQTKT MFIVYYKPRT SQFIISLNKY LEAMSNKFSV GMRFKMRFEG EDSPERRYSG
301: TVIGVKDCSP HWKDSKWRCL EVHWDEPASI SRPNKVSPWE IEPFVNSENV PKSVMLKNKR PRQVSEVSAL GITASNLWSS VLTQPHEFAQ SCITSQWSSP
401: QQCHRDANED AKKSDWLNNS YSVSNVAKDS TLNDQMVSPV EQKKPETTAN YRLFGIDLMS SSLAVPEEKT APMRPINISK PTMDSHSDPK SEISKVSEEK
501: KQEPAEGSPK EVQSKQSSST RSRTKVQMQG VPVGRAVDLN ALKGYNELID DIEKLFDIKG ELRSRNQWEI VFTDDEGDMM LVGDDPWPEF CNMVKRIFIW
601: SKEEVKKMTP GNQLRMLLRE VETTLTTTSK TDNHSN
Arabidopsis Description
ARF9Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.