Factsheet for Bra003484.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001634.1-P
Bra001900.1-P
Bra009867.1-P
Bra012190.1-P
Bra016492.1-P
Bra016517.1-P
Bra017362.1-P
Bra018124.1-P
Bra021184.1-P
Bra022164.1-P
Bra025720.1-P
Bra025775.1-P
Bra027504.1-P
Bra027944.1-P
Bra033886.1-P
Bra034234.1-P
Bra035185.1-P
Bra036557.1-P
Bra039732.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62100.1	Bra016517.1-P	AT1G19220.1	21734647
AT3G62100.1	Bra025720.1-P	AT1G19220.1	21734647
AT3G62100.1	Bra012190.1-P	AT1G19850.1	21734647
AT3G62100.1	Bra016492.1-P	AT1G19850.1	21734647
AT3G62100.1	Bra025775.1-P	AT1G19850.1	21734647
AT3G62100.1	Bra017362.1-P	AT1G34310.1	21734647
AT3G62100.1	Bra018124.1-P	AT1G34310.1	21734647
AT3G62100.1	Bra027944.1-P	AT1G34310.1	21734647
AT3G62100.1	Bra034234.1-P	AT1G34310.1	21734647
AT3G62100.1	Bra035185.1-P	AT1G80390.1	21734647
AT3G62100.1	Bra040476.1-P	AT2G46990.1	21734647
AT3G62100.1	Bra001634.1-P	AT3G16500.1	21734647
AT3G62100.1	Bra021184.1-P	AT3G16500.1	21734647
AT3G62100.1	Bra022164.1-P	AT3G16500.1	21734647
AT3G62100.1	Bra001900.1-P	AT3G23050.1	21734647
AT3G62100.1	Bra033886.1-P	AT3G23050.1	21734647
AT3G62100.1	Bra039732.1-P	AT4G14560.1	21734647
AT3G62100.1	Bra009867.1-P	AT5G25890.1	21734647
AT3G62100.1	Bra036557.1-P	AT5G25890.1	21734647
AT3G62100.1	Bra027504.1-P	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67874	Canola	plastid	100.0	99.42
CDY25089	Canola	plastid	98.84	98.27
Bra007661.1-P	Field mustard	plastid	96.51	93.79
AT3G62100.1	Thale cress	plastid	91.28	91.28
Bra014411.1-P	Field mustard	nucleus, plastid	66.28	90.48
Bra040476.1-P	Field mustard	cytosol, plastid	80.81	79.89
Bra021257.1-P	Field mustard	cytosol	21.51	51.39
VIT_07s0005g02550.t01	Wine grape	plastid	51.74	50.86
KRH33660	Soybean	plastid	45.93	44.63
GSMUA_Achr8P29850_001	Banana	nucleus	45.35	44.32
KRG96613	Soybean	plastid	45.35	44.07
GSMUA_Achr9P16800_001	Banana	nucleus	44.19	43.68
KRH68346	Soybean	plastid	45.35	43.33
KRH69143	Soybean	plastid	45.35	43.33
Os01t0286900-01	Rice	nucleus	28.49	42.61
Bra022224.1-P	Field mustard	nucleus, plastid	36.63	39.87
Bra001670.1-P	Field mustard	nucleus	34.3	39.86
EES00605	Sorghum	nucleus, plastid	41.28	36.79
Os02t0723400-02	Rice	nucleus	41.86	35.12
Zm00001d008201_P001	Maize	cytosol	25.58	33.85
Zm00001d040541_P001	Maize	nucleus, plastid	35.47	33.7
TraesCS1D01G084100.1	Wheat	nucleus, plastid	40.12	33.33
TraesCS1B01G100300.1	Wheat	plastid	40.12	29.11
Bra036557.1-P	Field mustard	nucleus	27.33	26.86
TraesCS1A01G082700.2	Wheat	plastid	40.12	26.24
Bra009867.1-P	Field mustard	cytosol	26.74	26.14
HORVU1Hr1G017770.6	Barley	cytosol, mitochondrion, vacuole	30.23	25.12
Bra011045.1-P	Field mustard	nucleus	33.72	23.87
Bra015326.1-P	Field mustard	nucleus	31.4	22.98
Bra015289.1-P	Field mustard	nucleus	34.88	22.14
Bra005508.1-P	Field mustard	nucleus	30.23	20.47
Bra022934.1-P	Field mustard	nucleus	28.49	20.25
Bra011332.1-P	Field mustard	nucleus	26.74	19.91
Bra018938.1-P	Field mustard	nucleus	27.91	18.97
Bra023958.1-P	Field mustard	nucleus	25.58	18.11
Bra014303.1-P	Field mustard	nucleus	27.91	17.78
Bra021184.1-P	Field mustard	nucleus	27.33	17.47
Bra032503.1-P	Field mustard	nucleus	30.81	17.1
Bra001634.1-P	Field mustard	nucleus	26.74	16.91
Bra024187.1-P	Field mustard	plastid	36.63	15.83
Bra022164.1-P	Field mustard	nucleus	26.16	15.79

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra003484	EnsemblPlants:Bra003484.1
EnsemblPlants:Bra003484.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	UniProt:M4CH01	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF15	SUPFAM:SSF54277	UniParc:UPI00025418D8	SEG:seg	:

Description

AT3G62100 (E=3e-067) IAA30 | IAA30 (INDOLE-3-ACETIC ACID INDUCIBLE 30); transcription factor

Coordinates

chrA07:+:13437752..13438756

Molecular Weight (calculated)

19336.4 Da

IEP (calculated)

4.420

GRAVY (calculated)

-0.495

Length

172 amino acids

Sequence
(BLAST)

001: MGRGRSSSSS SIESSCKSNP FGGSSSNTRN LSTDLRLGLS FGSSSGQYYS GGENHEYEVV AADHEMIMEE EEDQNECNSL GSFYVKVNME GVPIGRKIDL
101: FALNGYHDLI TTLDYMFNAS ILWAEEEEMC SEKSHVLTYA DKEGDWMMVG DVPWEMFLSS VRRLKISRAY HY

Best Arabidopsis Sequence Match ( AT3G62100.1 )
(BLAST)

001: MGRGRSSSSS SIESSCKSNP FGVSSSNTRN LSTDLRLGLS FGSSSGQYYN GGDNHEYDGV GAAEEMMIME EEEQNECNSV GSFYVKVNME GVPIGRKIDL
101: LSLNGYHDLI TTLDYMFNAS ILWAEEEDMC SEKSHVLTYA DKEGDWMMVG DVPWEMFLSS VRRLKISRAY HY

Arabidopsis Description

IAA30Auxin-responsive protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.