Factsheet for Bra032503.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53196	Canola	nucleus	70.97	96.92
AT1G04550.2	Thale cress	cytosol	61.29	79.5
Bra015326.1-P	Field mustard	nucleus	59.35	78.3
Bra022934.1-P	Field mustard	nucleus	53.87	69.01
Bra005508.1-P	Field mustard	nucleus	52.9	64.57
PGSC0003DMT400075427	Potato	nucleus	34.19	45.69
Solyc12g096980.1.1	Tomato	nucleus	34.19	45.49
PGSC0003DMT400003784	Potato	nucleus	38.39	43.91
Solyc09g090910.1.1	Tomato	nucleus	39.35	43.26
Bra011045.1-P	Field mustard	nucleus	32.26	41.15
VIT_05s0049g01970.t01	Wine grape	nucleus	41.94	40.5
Bra021257.1-P	Field mustard	cytosol	9.03	38.89
Bra036557.1-P	Field mustard	nucleus	19.03	33.71
Bra009867.1-P	Field mustard	cytosol	18.71	32.95
Bra015289.1-P	Field mustard	nucleus	28.71	32.84
Bra018938.1-P	Field mustard	nucleus	26.45	32.41
Bra014303.1-P	Field mustard	nucleus	27.74	31.85
Bra001670.1-P	Field mustard	nucleus	15.16	31.76
Bra022224.1-P	Field mustard	nucleus, plastid	15.81	31.01
Bra003484.1-P	Field mustard	nucleus, plastid	17.1	30.81
Bra040476.1-P	Field mustard	cytosol, plastid	16.77	29.89
Bra007661.1-P	Field mustard	plastid	16.77	29.38
Bra021184.1-P	Field mustard	nucleus	24.52	28.25
Bra014411.1-P	Field mustard	nucleus, plastid	11.29	27.78
Bra024187.1-P	Field mustard	plastid	35.16	27.39
Bra001634.1-P	Field mustard	nucleus	23.87	27.21
Bra022164.1-P	Field mustard	nucleus	24.52	26.67
Bra011332.1-P	Field mustard	nucleus	16.45	22.08
Bra023958.1-P	Field mustard	nucleus	16.13	20.58

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra032503	EnsemblPlants:Bra032503.1
EnsemblPlants:Bra032503.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	UniProt:M4EUM1	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	SUPFAM:SSF54277	UniParc:UPI0002543611	SEG:seg	:

Description

AT1G04550 (E=3e-072) IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor/ transcription repressor

Coordinates

chrA09:-:36341931..36344290

Molecular Weight (calculated)

34203.7 Da

IEP (calculated)

9.733

GRAVY (calculated)

-0.670

Length

310 amino acids

Sequence
(BLAST)

001: MRGGSELELR KSNLPAESDL ELGLGLSLGG GAWRERGRIL TAKDFPSVGS KRAAADSSSS HHGASPPRSS QVVGWPPVGS HRMNSLANKQ AMKAEQGEGK
101: EEGKKEDEPK DVSVKVVEGS GFVKVNKDGV GIGRKVDVRA HSSYENLALT LEEMFFGRTG TTSVEKLKPL RLLDGSSEFV LTYEDKEGDW MLVGDVPWRM
201: FITSVKRLRI MGTSEASGLA QLRYIKEAEE IRLAMQPLDL IKTVREIEQE GTGGQETEQQ KQNTAVDLSK RLKDFASSLK ALEEWRKRKM ERARQRDLEK
301: TGGLSLSKTS

Best Arabidopsis Sequence Match ( AT1G04550.2 )
(BLAST)

001: MRGVSELEVG KSNLPAESEL ELGLGLSLGG GAWKERGRIL TAKDFPSVGS KRSAESSSHQ GASPPRSSQV VGWPPIGLHR MNSLVNNQAM KAARAEEGDG
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV

Arabidopsis Description

IAA12Auxin-responsive protein IAA12 [Source:UniProtKB/Swiss-Prot;Acc:Q38830]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.