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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001670.1-P
Bra001900.1-P
Bra002327.1-P
Bra002479.1-P
Bra002923.1-P
Bra009867.1-P
Bra012190.1-P
Bra013748.1-P
Bra015289.1-P
Bra015298.1-P
Bra016492.1-P
Bra016517.1-P
Bra019255.1-P
Bra020125.1-P
Bra020748.1-P
Bra021257.1-P
Bra022224.1-P
Bra022283.1-P
Bra025720.1-P
Bra025775.1-P
Bra028110.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra035427.1-P
Bra035563.1-P
Bra036557.1-P
Bra039732.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G51950.1 Bra015289.1-P AT1G04100.1 21734647
AT1G51950.1 Bra015298.1-P AT1G04250.1 21734647
AT1G51950.1 Bra030560.1-P AT1G04250.1 21734647
AT1G51950.1 Bra032520.1-P AT1G04250.1 21734647
AT1G51950.1 Bra016517.1-P AT1G19220.1 18505759
AT1G51950.1 Bra025720.1-P AT1G19220.1 18505759
AT1G51950.1 Bra016517.1-P AT1G19220.1 21734647
AT1G51950.1 Bra025720.1-P AT1G19220.1 21734647
AT1G51950.1 Bra012190.1-P AT1G19850.1 21734647
AT1G51950.1 Bra016492.1-P AT1G19850.1 21734647
AT1G51950.1 Bra025775.1-P AT1G19850.1 21734647
AT1G51950.1 Bra012190.1-P AT1G19850.1 22096563
AT1G51950.1 Bra016492.1-P AT1G19850.1 22096563
AT1G51950.1 Bra025775.1-P AT1G19850.1 22096563
AT1G51950.1 Bra035427.1-P AT1G59750.1 22096563
AT1G51950.1 Bra040476.1-P AT2G46990.1 21734647
AT1G51950.1 Bra020748.1-P AT3G06430.1 21798944
AT1G51950.1 Bra001670.1-P AT3G17600.1 21734647
AT1G51950.1 Bra021257.1-P AT3G17600.1 21734647
AT1G51950.1 Bra022224.1-P AT3G17600.1 21734647
AT1G51950.1 Bra022283.1-P AT3G18140.1 21798944
AT1G51950.1 Bra001900.1-P AT3G23050.1 21798944
AT1G51950.1 Bra033886.1-P AT3G23050.1 21798944
AT1G51950.1 Bra039732.1-P AT4G14560.1 21734647
AT1G51950.1 Bra039732.1-P AT4G14560.1 21798944
AT1G51950.1 Bra013748.1-P AT4G23980.1 21734647
AT1G51950.1 Bra019255.1-P AT4G23980.1 21734647
AT1G51950.1 Bra002327.1-P AT5G20730.1 18505759
AT1G51950.1 Bra020125.1-P AT5G20730.1 18505759
AT1G51950.1 Bra002327.1-P AT5G20730.1 21734647
AT1G51950.1 Bra020125.1-P AT5G20730.1 21734647
AT1G51950.1 Bra009867.1-P AT5G25890.1 21734647
AT1G51950.1 Bra036557.1-P AT5G25890.1 21734647
AT1G51950.1 Bra028110.1-P AT5G37020.1 21734647
AT1G51950.1 Bra002923.1-P AT5G55220.1 21798944
AT1G51950.1 Bra035563.1-P AT5G55220.1 21798944
AT1G51950.1 Bra002479.1-P AT5G60450.1 22096563
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22876 Canola nucleus 97.63 97.63
CDY33844 Canola nucleus 93.68 93.68
Bra014303.1-P Field mustard nucleus 86.56 81.11
AT1G51950.1 Thale cress nucleus 81.42 77.15
Bra021184.1-P Field mustard nucleus 64.43 60.59
Bra001634.1-P Field mustard nucleus 61.66 57.35
Bra022164.1-P Field mustard nucleus 60.87 54.04
Bra009867.1-P Field mustard cytosol 35.18 50.57
Bra036557.1-P Field mustard nucleus 33.6 48.57
TraesCS1A01G122600.2 Wheat nucleus 39.92 44.89
TraesCS1D01G123500.1 Wheat nucleus 39.92 44.49
Solyc03g121060.2.1 Tomato nucleus 49.01 43.21
PGSC0003DMT400006709 Potato nucleus 48.22 43.11
Zm00001d010360_P001 Maize cytosol, nucleus 38.74 42.98
EES17832 Sorghum nucleus 40.32 42.15
TraesCS3B01G127400.1 Wheat nucleus 37.94 41.74
Zm00001d039513_P001 Maize cytosol, nucleus, plastid 37.55 41.48
GSMUA_Achr3P16300_001 Banana endoplasmic reticulum, golgi, mitochondrion, plastid 36.76 40.79
Os01t0190300-01 Rice nucleus 38.34 40.76
TraesCS3D01G110200.1 Wheat nucleus 36.76 40.43
KRH09948 Soybean nucleus 50.99 40.31
Zm00001d037691_P003 Maize cytosol, nucleus 38.74 39.68
HORVU1Hr1G028170.4 Barley cytosol, nucleus, plastid 38.74 39.68
GSMUA_Achr5P09310_001 Banana endoplasmic reticulum 36.76 39.57
HORVU3Hr1G019750.4 Barley cytosol, nucleus, plastid 37.55 38.78
KRH47203 Soybean nucleus 46.64 37.22
KRH23388 Soybean nucleus 50.59 36.99
TraesCS3A01G108400.1 Wheat cytosol, nucleus, peroxisome 36.76 36.9
KRH44271 Soybean nucleus 45.45 36.74
Os02t0228900-01 Rice nucleus 43.08 36.33
OQU84670 Sorghum nucleus 41.11 35.62
Zm00001d016277_P002 Maize nucleus 41.5 35.12
Bra021257.1-P Field mustard cytosol 9.88 34.72
GSMUA_AchrUn_... Banana nucleus 41.9 34.42
Bra015326.1-P Field mustard nucleus 31.62 34.04
Bra022934.1-P Field mustard nucleus 32.41 33.88
Bra005508.1-P Field mustard nucleus 32.81 32.68
Bra001670.1-P Field mustard nucleus 18.97 32.43
GSMUA_Achr7P13680_001 Banana nucleus 46.64 32.15
TraesCS1B01G356600.1 Wheat cytosol 37.55 31.99
TraesCS1A01G343300.1 Wheat nucleus 36.76 31.63
TraesCS1D01G345400.1 Wheat nucleus 36.76 31.53
Os05t0523300-01 Rice nucleus 40.32 31.19
Bra011045.1-P Field mustard nucleus 29.64 30.86
Bra022224.1-P Field mustard nucleus, plastid 18.97 30.38
VIT_09s0002g03410.t01 Wine grape nucleus 52.17 30.07
TraesCS3D01G276600.1 Wheat cytosol, mitochondrion, nucleus 39.13 29.55
Os01t0741900-01 Rice nucleus 38.74 29.25
TraesCS3A01G276500.1 Wheat cytosol, mitochondrion, nucleus 38.74 28.74
TraesCS3B01G310500.1 Wheat cytosol, mitochondrion, nucleus 38.74 28.57
Zm00001d043515_P002 Maize cytosol, mitochondrion, nucleus 39.53 28.01
KXG33336 Sorghum nucleus 40.32 27.95
Bra003484.1-P Field mustard nucleus, plastid 18.97 27.91
HORVU3Hr1G070620.5 Barley cytosol, mitochondrion, nucleus 38.34 27.48
KXG22376 Sorghum nucleus 37.15 27.25
Bra040476.1-P Field mustard cytosol, plastid 18.58 27.01
OQU86163 Sorghum golgi, plastid 37.94 26.82
Bra032503.1-P Field mustard nucleus 32.41 26.45
Zm00001d038784_P001 Maize nucleus 35.97 25.78
Bra007661.1-P Field mustard plastid 17.79 25.42
Bra015289.1-P Field mustard nucleus 26.48 24.72
Bra014411.1-P Field mustard nucleus, plastid 11.07 22.22
Bra011332.1-P Field mustard nucleus 18.58 20.35
Bra023958.1-P Field mustard nucleus 19.37 20.16
Bra024187.1-P Field mustard plastid 30.43 19.35
Protein Annotations
MapMan:11.2.2.1.2Gene3D:3.10.20.90InterPro:AUX/IAA_domInterPro:AUX_IAAEnsemblPlantsGene:Bra018938EnsemblPlants:Bra018938.1
EnsemblPlants:Bra018938.1-PGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009734
GO:GO:0009987InterPro:IPR000270UniProt:M4DQZ5InterPro:PB1_domPFAM:PF02309PFscan:PS51745
PANTHER:PTHR31734PANTHER:PTHR31734:SF2SUPFAM:SSF54277UniParc:UPI000253E973::
Description
AT1G51950 (E=2e-108) IAA18 | IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18); transcription factor
Coordinates
chrA06:-:1130532..1131843
Molecular Weight (calculated)
28049.1 Da
IEP (calculated)
10.008
GRAVY (calculated)
-0.787
Length
253 amino acids
Sequence
(BLAST)
001: MEGYSRNWFR DDKASVYNSE EKKLELKLGP PGEDEAGSSM IRNIKKEPKD KSILSLARNH FSSPSTTNKT TSQKRTAPGP VVGWPPVRSF RKNLTNGSSS
101: KLGNESTSNG VVLKNQKCDD DNAREKPMGA NRQGGLFVKI NMHGVPIGRK VDLSAHNSYE QLSFTVDKLF RGLLAAQRES SSFGEEEKPI TGLLDGNGEY
201: TLTYEDNEGD KMLVGDVPWH MFVSSVKRLR VIKTSLISSA LTYGNGKQEK MRS
Best Arabidopsis Sequence Match ( AT1G51950.1 )
(BLAST)
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
Arabidopsis Description
IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.