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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001598.1-P
Bra001634.1-P
Bra001670.1-P
Bra002479.1-P
Bra003518.1-P nucleus
Bra007720.1-P nucleus
Bra011332.1-P
Bra011955.1-P
Bra012190.1-P
Bra013748.1-P
Bra014303.1-P
Bra014378.1-P nucleus
Bra015298.1-P
Bra016492.1-P
Bra018938.1-P
Bra019255.1-P
Bra021117.1-P
Bra021184.1-P
Bra021257.1-P
Bra022164.1-P
Bra022224.1-P
Bra023958.1-P
Bra024406.1-P
Bra025775.1-P
Bra027232.1-P
Bra027504.1-P
Bra030560.1-P
Bra032520.1-P
Bra035185.1-P
Bra037824.1-P
Bra039732.1-P
Bra040122.1-P
Bra040398.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G04250.1 Bra015298.1-P AT1G04250.1 21734647
AT1G04250.1 Bra030560.1-P AT1G04250.1 21734647
AT1G04250.1 Bra032520.1-P AT1G04250.1 21734647
AT1G04250.1 Bra012190.1-P AT1G19850.1 22096563
AT1G04250.1 Bra016492.1-P AT1G19850.1 22096563
AT1G04250.1 Bra025775.1-P AT1G19850.1 22096563
AT1G04250.1 Bra014303.1-P AT1G51950.1 21734647
AT1G04250.1 Bra018938.1-P AT1G51950.1 21734647
AT1G04250.1 Bra035185.1-P AT1G80390.1 21734647
AT1G04250.1 Bra011955.1-P AT2G28350.1 21734647
AT1G04250.1 Bra040122.1-P AT3G04730.1 21734647
AT1G04250.1 Bra040398.1-P AT3G04730.1 21734647
AT1G04250.1 Bra001598.1-P AT3G15540.1 21734647
AT1G04250.1 Bra021117.1-P AT3G15540.1 21734647
AT1G04250.1 Bra027232.1-P AT3G15540.1 21734647
AT1G04250.1 Bra001634.1-P AT3G16500.1 21734647
AT1G04250.1 Bra021184.1-P AT3G16500.1 21734647
AT1G04250.1 Bra022164.1-P AT3G16500.1 21734647
AT1G04250.1 Bra001670.1-P AT3G17600.1 21734647
AT1G04250.1 Bra021257.1-P AT3G17600.1 21734647
AT1G04250.1 Bra022224.1-P AT3G17600.1 21734647
AT1G04250.1 Bra003518.1-P AT3G62980.1 11713520
AT1G04250.1 Bra007720.1-P AT3G62980.1 11713520
AT1G04250.1 Bra014378.1-P AT3G62980.1 11713520
AT1G04250.1 Bra003518.1-P AT3G62980.1 22912871
AT1G04250.1 Bra007720.1-P AT3G62980.1 22912871
AT1G04250.1 Bra014378.1-P AT3G62980.1 22912871
AT1G04250.1 Bra003518.1-P AT3G62980.1 22912871
AT1G04250.1 Bra007720.1-P AT3G62980.1 22912871
AT1G04250.1 Bra014378.1-P AT3G62980.1 22912871
AT1G04250.1 Bra039732.1-P AT4G14560.1 9342315
AT1G04250.1 Bra013748.1-P AT4G23980.1 21734647
AT1G04250.1 Bra019255.1-P AT4G23980.1 21734647
AT1G04250.1 Bra011332.1-P AT4G32280.1 21734647
AT1G04250.1 Bra023958.1-P AT4G32280.1 21734647
AT1G04250.1 Bra027504.1-P AT5G43700.1 21734647
AT1G04250.1 Bra002479.1-P AT5G60450.1 21734647
AT1G04250.1 Bra024406.1-P AT5G65670.1 21734647
AT1G04250.1 Bra037824.1-P AT5G65670.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY32537 Canola nucleus 99.56 99.12
CDY10068 Canola cytosol, nucleus, plastid 97.36 96.93
AT1G04250.1 Thale cress cytosol, nucleus, plastid 89.87 89.08
Bra015298.1-P Field mustard nucleus 86.78 87.95
Bra030560.1-P Field mustard nucleus 88.55 87.77
KRH34377 Soybean nucleus 70.04 66.53
Bra039855.1-P Field mustard nucleus 67.84 66.09
Bra001900.1-P Field mustard cytosol, nucleus, plastid 67.84 64.98
VIT_05s0020g04690.t01 Wine grape cytosol, nucleus, plastid 68.72 64.2
Bra033886.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 67.4 63.22
Solyc09g083290.2.1 Tomato nucleus 65.64 63.14
PGSC0003DMT400015610 Potato nucleus 65.2 62.18
Bra040398.1-P Field mustard nucleus 61.67 60.61
GSMUA_Achr10P... Banana nucleus 62.56 58.92
Bra040122.1-P Field mustard nucleus 56.83 57.33
GSMUA_Achr8P20610_001 Banana nucleus 60.79 56.56
GSMUA_Achr9P25550_001 Banana nucleus 60.35 56.38
GSMUA_Achr4P21020_001 Banana nucleus 60.79 55.65
Bra001899.1-P Field mustard nucleus 41.41 54.97
Bra033890.1-P Field mustard nucleus 41.41 54.65
Bra023771.1-P Field mustard nucleus 40.97 54.39
GSMUA_Achr9P10700_001 Banana nucleus 57.27 53.94
TraesCS5D01G069300.1 Wheat nucleus 58.59 52.78
TraesCS5A01G058600.1 Wheat nucleus 58.59 52.57
TraesCS5B01G058500.1 Wheat nucleus 58.15 52.38
Os03t0742900-01 Rice vacuole 53.3 51.27
Os03t0633500-01 Rice cytosol 52.42 51.07
EER90896 Sorghum nucleus 52.86 51.06
Zm00001d033976_P002 Maize nucleus 53.3 51.05
Bra039732.1-P Field mustard nucleus 38.33 50.88
Bra015297.1-P Field mustard cytosol, nucleus, plastid 41.41 50.54
TraesCS5D01G392000.1 Wheat nucleus 51.54 50.43
Bra037824.1-P Field mustard plastid 43.17 50.26
TraesCS5A01G382600.1 Wheat nucleus 51.54 50.21
TraesCS5B01G386800.1 Wheat nucleus 51.54 50.0
HORVU5Hr1G094220.1 Barley nucleus 51.54 49.37
Bra026755.1-P Field mustard nucleus 33.92 49.36
Zm00001d013302_P002 Maize nucleus 49.34 49.12
GSMUA_Achr4P22520_001 Banana nucleus 54.63 49.01
EES17334 Sorghum cytosol 60.35 48.75
KRG92429 Soybean cytosol, nucleus, plastid 70.48 48.34
Bra027504.1-P Field mustard nucleus 40.53 48.17
HORVU5Hr1G014300.4 Barley nucleus 58.15 47.83
Bra032521.1-P Field mustard nucleus 37.89 47.78
Os12t0601300-01 Rice nucleus 58.15 47.65
TraesCS5B01G381900.1 Wheat cytosol, mitochondrion, nucleus 52.86 47.43
Bra001598.1-P Field mustard nucleus 40.53 47.42
OQU91311 Sorghum cytosol, mitochondrion, nucleus 54.63 46.97
Bra027232.1-P Field mustard nucleus 38.77 45.36
Bra024406.1-P Field mustard nucleus 45.81 44.64
Bra021117.1-P Field mustard cytosol, nucleus, plastid 37.89 43.65
Bra018993.1-P Field mustard nucleus 36.56 40.89
HORVU5Hr1G093580.2 Barley cytosol, nucleus, peroxisome 50.22 40.57
Bra011082.1-P Field mustard nucleus 49.78 38.97
Bra030219.1-P Field mustard nucleus 44.49 37.97
Bra031850.1-P Field mustard mitochondrion 48.46 37.67
Zm00001d041416_P001 Maize nucleus 56.39 37.21
TraesCS5D01G388300.2 Wheat cytosol 51.1 36.83
TraesCS5A01G378300.2 Wheat cytosol, mitochondrion, nucleus 48.9 36.39
Protein Annotations
Gene3D:3.10.20.90MapMan:35.1InterPro:AUX/IAA_domInterPro:AUX_IAAEnsemblPlantsGene:Bra032520EnsemblPlants:Bra032520.1
EnsemblPlants:Bra032520.1-PGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009734
GO:GO:0009987InterPro:IPR000270UniProt:M4EUN8InterPro:PB1_domPFAM:PF02309PFscan:PS51745
PANTHER:PTHR31734PANTHER:PTHR31734:SF28SUPFAM:SSF54277UniParc:UPI0002543621SEG:seg:
Description
AT1G04250 (E=2e-102) AXR3, IAA17 | AXR3 (AUXIN RESISTANT 3); transcription factor
Coordinates
chrA09:-:36416953..36418865
Molecular Weight (calculated)
24943.8 Da
IEP (calculated)
7.136
GRAVY (calculated)
-0.552
Length
227 amino acids
Sequence
(BLAST)
001: MGTVELNLRE TELCLGLPGG ETGAPVTGTK RGFSETVDLK LNLNNEPESN EGSKTHDVVT SVSKEKSSSP KDPAKPPAKA QVVGWPPVRS YRKNVMGSCQ
101: KPSGGTETAS FVKVSMDGAP YLRKVDLKMY KSYDELSNAL SNMFSSFTMG KYGGEEGMID FMNERNMALV NTWDYVPSYE DKDGDWMLVG DVPWPMFVDT
201: CKRLRLMKGS DAIGLAPRAM EKCKSRA
Best Arabidopsis Sequence Match ( AT1G04250.1 )
(BLAST)
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.