Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001013 | |
| PGSC0003DMT400006709 | |
| PGSC0003DMT400006800 | |
| PGSC0003DMT400008765 | nucleus, nucleus |
| PGSC0003DMT400009660 | |
| PGSC0003DMT400013682 | nucleus, nucleus |
| PGSC0003DMT400015610 | |
| PGSC0003DMT400015655 | |
| PGSC0003DMT400020839 | |
| PGSC0003DMT400020874 | |
| PGSC0003DMT400029517 | nucleus, nucleus |
| PGSC0003DMT400031965 | |
| PGSC0003DMT400034978 | |
| PGSC0003DMT400035770 | |
| PGSC0003DMT400042074 | |
| PGSC0003DMT400042572 | |
| PGSC0003DMT400052767 | |
| PGSC0003DMT400053430 | nucleus, nucleus |
| PGSC0003DMT400056570 | nucleus, nucleus |
| PGSC0003DMT400061752 | nucleus, nucleus |
| PGSC0003DMT400062489 | |
| PGSC0003DMT400063662 | |
| PGSC0003DMT400075691 | |
| PGSC0003DMT400093216 | nucleus, nucleus |
| PGSC0003DMT400093571 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g083290.2.1 | Tomato | nucleus | 97.06 | 97.88 |
| PGSC0003DMT400041976 | Potato | nucleus | 68.49 | 76.53 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 76.05 | 74.49 |
| KRH34377 | Soybean | nucleus | 71.85 | 71.55 |
| CDY10694 | Canola | mitochondrion | 52.1 | 71.26 |
| Bra001900.1-P | Field mustard | cytosol, nucleus, plastid | 68.07 | 68.35 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 68.07 | 68.35 |
| AT4G14550.2 | Thale cress | nucleus | 66.81 | 67.95 |
| Bra039855.1-P | Field mustard | nucleus | 65.97 | 67.38 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 65.97 | 67.38 |
| Bra033886.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 68.49 | 67.36 |
| PGSC0003DMT400013627 | Potato | nucleus | 60.5 | 67.29 |
| CDY47148 | Canola | nucleus | 65.55 | 66.95 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 68.07 | 66.67 |
| CDX89832 | Canola | nucleus | 62.6 | 66.52 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 63.87 | 66.38 |
| CDY18214 | Canola | nucleus | 62.18 | 66.07 |
| Bra015298.1-P | Field mustard | nucleus | 62.18 | 66.07 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 68.07 | 65.85 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 66.39 | 65.83 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 66.39 | 65.83 |
| Bra030560.1-P | Field mustard | nucleus | 63.03 | 65.5 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 63.03 | 65.5 |
| Bra032520.1-P | Field mustard | nucleus | 62.18 | 65.2 |
| CDY32537 | Canola | nucleus | 62.18 | 64.91 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 66.39 | 64.75 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 61.76 | 64.47 |
| GSMUA_Achr10P... | Banana | nucleus | 65.13 | 64.32 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 65.97 | 63.31 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 65.97 | 63.05 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 63.45 | 62.66 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 62.6 | 61.32 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 61.34 | 57.71 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 60.92 | 57.54 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 60.92 | 57.54 |
| PGSC0003DMT400051896 | Potato | plastid | 36.55 | 56.86 |
| Os03t0633500-01 | Rice | cytosol | 55.04 | 56.22 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 59.24 | 55.73 |
| PGSC0003DMT400049677 | Potato | nucleus | 42.44 | 55.19 |
| EES17334 | Sorghum | cytosol | 63.45 | 53.74 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 74.37 | 53.47 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 61.76 | 53.26 |
| EER90896 | Sorghum | nucleus | 52.52 | 53.19 |
| Zm00001d033976_P002 | Maize | nucleus | 52.94 | 53.16 |
| Os03t0742900-01 | Rice | vacuole | 52.52 | 52.97 |
| PGSC0003DMT400042572 | Potato | nucleus | 23.95 | 52.78 |
| Os12t0601300-01 | Rice | nucleus | 61.34 | 52.71 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 51.26 | 52.59 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 51.26 | 52.36 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 51.26 | 52.14 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 51.68 | 51.9 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 55.04 | 51.78 |
| Zm00001d013302_P002 | Maize | nucleus | 49.16 | 51.32 |
| PGSC0003DMT400015655 | Potato | nucleus | 42.02 | 51.28 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 40.34 | 50.53 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 55.88 | 50.38 |
| PGSC0003DMT400006798 | Potato | nucleus | 44.54 | 50.0 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 34.45 | 50.0 |
| PGSC0003DMT400013662 | Potato | cytosol | 38.66 | 48.42 |
| PGSC0003DMT400006548 | Potato | plastid | 51.26 | 46.74 |
| PGSC0003DMT400006800 | Potato | mitochondrion | 38.24 | 46.67 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 52.94 | 44.84 |
| PGSC0003DMT400001013 | Potato | nucleus | 50.84 | 43.37 |
| Zm00001d041416_P001 | Maize | nucleus | 59.66 | 41.28 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 53.78 | 40.63 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 51.26 | 40.0 |
| CDY63072 | Canola | nucleus | 63.45 | 37.94 |
| PGSC0003DMT400016356 | Potato | nucleus | 55.04 | 37.54 |
Protein Annotations
| EntrezGene:102593208 | Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| UniProt:M1A6A1 | InterPro:PB1_dom | PFAM:PF02309 | EnsemblPlantsGene:PGSC0003DMG400006093 | PGSC:PGSC0003DMG400006093 | EnsemblPlants:PGSC0003DMT400015610 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF84 | SUPFAM:SSF54277 | UniParc:UPI000296D74E | RefSeq:XP_006362195.1 |
| SEG:seg | : | : | : | : | : |
Description
Auxin responsive protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006093]
Coordinates
chr9:+:55351420..55354606
Molecular Weight (calculated)
26396.7 Da
IEP (calculated)
7.742
GRAVY (calculated)
-0.556
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLKETELCL GLPGGGGGGG GGGELIRDNN NNNKINGKRG FSETVDLKLN FHQANDDISC AMENNKMKNS VTTTKEVVCN KDPIKPPAKA QVVGWPPVRS
101: FRKNVMAQKS NTEESEKTTV AFVKVCMDGA PYLRKVDLKM YKSYQELSDA LAKMFSSFTN GNYGSQGMID FMNESKLMDL LNSSEYVPTY EDKDGDWMLV
201: GDVPWEMFVD SCKRLRIMKG SEAIGLAPRA MEKCKSRI
101: FRKNVMAQKS NTEESEKTTV AFVKVCMDGA PYLRKVDLKM YKSYQELSDA LAKMFSSFTN GNYGSQGMID FMNESKLMDL LNSSEYVPTY EDKDGDWMLV
201: GDVPWEMFVD SCKRLRIMKG SEAIGLAPRA MEKCKSRI
001: MNLKETELCL GLPGGTETVE SPAKSGVGNK RGFSETVDLK LNLQSNKQGH VDLNTNGAPK EKTFLKDPSK PPAKAQVVGW PPVRNYRKNV MANQKSGEAE
101: EAMSSGGGTV AFVKVSMDGA PYLRKVDLKM YTSYKDLSDA LAKMFSSFTM GSYGAQGMID FMNESKVMDL LNSSEYVPSY EDKDGDWMLV GDVPWPMFVE
201: SCKRLRIMKG SEAIGLAPRA MEKFKNRS
101: EAMSSGGGTV AFVKVSMDGA PYLRKVDLKM YTSYKDLSDA LAKMFSSFTM GSYGAQGMID FMNESKVMDL LNSSEYVPSY EDKDGDWMLV GDVPWPMFVE
201: SCKRLRIMKG SEAIGLAPRA MEKFKNRS
Arabidopsis Description
IAA14indole-3-acetic acid inducible 14 [Source:TAIR;Acc:AT4G14550]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.