Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400000345 | nucleus |
| PGSC0003DMT400006151 | nucleus, nucleus |
| PGSC0003DMT400008765 | nucleus |
| PGSC0003DMT400009660 | nucleus |
| PGSC0003DMT400013682 | nucleus |
| PGSC0003DMT400020839 | nucleus |
| PGSC0003DMT400029517 | nucleus |
| PGSC0003DMT400053430 | nucleus |
| PGSC0003DMT400056570 | nucleus |
| PGSC0003DMT400061752 | nucleus |
| PGSC0003DMT400093216 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g076850.2.1 | Tomato | nucleus | 97.42 | 97.42 |
| Bra030219.1-P | Field mustard | nucleus | 51.0 | 66.92 |
| CDY25617 | Canola | nucleus | 51.0 | 66.92 |
| KRH62157 | Soybean | nucleus | 67.62 | 65.56 |
| KRH72523 | Soybean | nucleus | 67.05 | 63.93 |
| KRH16912 | Soybean | nucleus | 67.05 | 63.76 |
| CDX89499 | Canola | nucleus | 49.28 | 63.47 |
| KRH52867 | Soybean | nucleus | 65.9 | 63.19 |
| VIT_18s0001g08090.t01 | Wine grape | cytosol, nucleus, vacuole | 73.07 | 62.2 |
| PGSC0003DMT400041976 | Potato | nucleus | 35.53 | 58.22 |
| PGSC0003DMT400006548 | Potato | plastid | 42.98 | 57.47 |
| AT2G22670.4 | Thale cress | nucleus | 55.3 | 57.1 |
| PGSC0003DMT400051896 | Potato | plastid | 24.93 | 56.86 |
| PGSC0003DMT400049677 | Potato | nucleus | 29.23 | 55.74 |
| PGSC0003DMT400013627 | Potato | nucleus | 33.81 | 55.14 |
| PGSC0003DMT400015610 | Potato | nucleus | 37.54 | 55.04 |
| PGSC0003DMT400001013 | Potato | nucleus | 41.26 | 51.61 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 27.79 | 51.05 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 36.39 | 51.0 |
| PGSC0003DMT400042572 | Potato | nucleus | 15.76 | 50.93 |
| PGSC0003DMT400013662 | Potato | cytosol | 27.51 | 50.53 |
| PGSC0003DMT400015655 | Potato | nucleus | 27.79 | 49.74 |
| PGSC0003DMT400006798 | Potato | nucleus | 29.8 | 49.06 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 22.92 | 48.78 |
| PGSC0003DMT400006800 | Potato | mitochondrion | 25.21 | 45.13 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | ProteinID:AAM29182 | ProteinID:AAM29182.1 | ProteinID:ABB55368 | ProteinID:ABB55368.1 |
| InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EMBL:AY098938 | EMBL:DQ252491 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | UniProt:M1A7J3 |
| InterPro:PB1_dom | PFAM:PF02309 | EnsemblPlantsGene:PGSC0003DMG400006393 | PGSC:PGSC0003DMG400006393 | EnsemblPlants:PGSC0003DMT400016356 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF18 | SUPFAM:SSF54277 | UniParc:UPI000294C723 | SEG:seg | : |
Description
Aux/IAA protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006393]
Coordinates
chr4:+:65678795..65684380
Molecular Weight (calculated)
37301.1 Da
IEP (calculated)
7.246
GRAVY (calculated)
-0.472
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPLLGVGE EEGQSNVTLL ASSTSLGSIC KKGSALKERN YMGLSDCSSV DSCNISTSSE DNNGCGLNLK ATELRLGLPG SQSPERGEET CPVSSTKVDE
101: KLLFPLHPAK DTAFSVSQKT VVTGNKRGFS DAMDGFSEGK FLSTSGVKAG DTKETSRVQP PKMKDANTQS TVPEAPSAVN EASNRAGSGA PATKAQVVGW
201: PPIRSFRKNT LASASKNNEE VDGKAGSPAL FIKVSMDGAP YLRKVDLRTY SAYQELSSAL EKMISCFTIG QYGSHGAPGK DLLSESKLKD LLHGSEYVLT
301: YEDKDGDWML VGDVPWEMFI DTCKRLRIMK GSDAIGLAPR AMEKCRSRN
101: KLLFPLHPAK DTAFSVSQKT VVTGNKRGFS DAMDGFSEGK FLSTSGVKAG DTKETSRVQP PKMKDANTQS TVPEAPSAVN EASNRAGSGA PATKAQVVGW
201: PPIRSFRKNT LASASKNNEE VDGKAGSPAL FIKVSMDGAP YLRKVDLRTY SAYQELSSAL EKMISCFTIG QYGSHGAPGK DLLSESKLKD LLHGSEYVLT
301: YEDKDGDWML VGDVPWEMFI DTCKRLRIMK GSDAIGLAPR AMEKCRSRN
001: MSPEEELQSN VSVASSSPTS NCISRNTLGG LKEHNYLGLS DCSSVGSSTL SPLAEDDKAT ISLKATELTL GLPGSQSPAR DTELNLLSPA KLDEKPFFPL
101: LPSKDEICSS SQKNNASGNK RGFSDTMDQF AEAKSSVYTE KNWMFPEAAA TQSVTKKDVP QNIPKGQSST TNNSSSPPAA KAQIVGWPPV RSYRKNTLAT
201: TCKNSDEVDG RPGSGALFVK VSMDGAPYLR KVDLRSYTNY GELSSALEKM FTTFTLGQCG SNGAAGKDML SETKLKDLLN GKDYVLTYED KDGDWMLVGD
301: VPWEMFIDVC KKLKIMKGCD AIGLAPRAME KSKMRA
101: LPSKDEICSS SQKNNASGNK RGFSDTMDQF AEAKSSVYTE KNWMFPEAAA TQSVTKKDVP QNIPKGQSST TNNSSSPPAA KAQIVGWPPV RSYRKNTLAT
201: TCKNSDEVDG RPGSGALFVK VSMDGAPYLR KVDLRSYTNY GELSSALEKM FTTFTLGQCG SNGAAGKDML SETKLKDLLN GKDYVLTYED KDGDWMLVGD
301: VPWEMFIDVC KKLKIMKGCD AIGLAPRAME KSKMRA
Arabidopsis Description
IAA9Auxin-responsive protein IAA9 [Source:UniProtKB/Swiss-Prot;Acc:Q38827]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.