Factsheet for PGSC0003DMT400020839

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006800
PGSC0003DMT400009660
PGSC0003DMT400020839
PGSC0003DMT400031965
PGSC0003DMT400042572
PGSC0003DMT400053380

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60450.1	PGSC0003DMT400009660	AT1G19850.1	22096563
AT5G60450.1	PGSC0003DMT400031965	AT1G34310.1	22096563
AT5G60450.1	PGSC0003DMT400006800	AT1G52830.1	22096563
AT5G60450.1	PGSC0003DMT400042572	AT1G52830.1	22096563
AT5G60450.1	PGSC0003DMT400053380	AT1G59750.1	22096563
AT5G60450.1	PGSC0003DMT400020839	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069190.1.1	Tomato	nucleus	98.52	98.52
KRH22924	Soybean	nucleus	34.03	75.62
VIT_06s0004g03130.t01	Wine grape	nucleus	71.52	72.68
KRG89021	Soybean	nucleus	64.98	66.54
KRH24914	Soybean	nucleus	64.73	66.29
KRH26391	Soybean	nucleus	64.24	65.21
CDX80168	Canola	nucleus	58.45	62.45
CDY31545	Canola	nucleus	58.08	62.22
Bra002479.1-P	Field mustard	nucleus	57.71	61.74
AT5G60450.1	Thale cress	nucleus	58.57	60.28
PGSC0003DMT400053380	Potato	nucleus	31.57	39.14
PGSC0003DMT400031965	Potato	nucleus	28.48	35.27
PGSC0003DMT400000345	Potato	nucleus	29.47	34.89
PGSC0003DMT400036765	Potato	nucleus	33.79	32.43
PGSC0003DMT400037454	Potato	nucleus	32.68	31.97
PGSC0003DMT400041127	Potato	nucleus	30.7	27.91
PGSC0003DMT400074169	Potato	nucleus	29.84	27.38
PGSC0003DMT400048034	Potato	nucleus	24.41	26.33
PGSC0003DMT400048032	Potato	nucleus	5.18	25.77
PGSC0003DMT400009660	Potato	nucleus	29.22	25.51
PGSC0003DMT400025312	Potato	nucleus	30.09	21.9
PGSC0003DMT400035592	Potato	nucleus	29.59	21.88
PGSC0003DMT400006151	Potato	nucleus	29.35	20.57

Protein Annotations

EntrezGene:102602099	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009791
GO:GO:0009987	GO:GO:0010050	GO:GO:0010158	GO:GO:0030154	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	UniProt:M1AE60	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	EnsemblPlantsGene:PGSC0003DMG400008065
PGSC:PGSC0003DMG400008065	EnsemblPlants:PGSC0003DMT400020839	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF20
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000296778C	RefSeq:XP_006340145.1	SEG:seg

Description

Auxin response factor 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400008065]

Coordinates

chr11:-:41112924..41122092

Molecular Weight (calculated)

90319.7 Da

IEP (calculated)

6.159

GRAVY (calculated)

-0.453

Length

811 amino acids

Sequence
(BLAST)

001: MEFDLNHALV SEVEKNVCCN EECDKGGGGG CVNCSLYTST TSSCSSNVSS SSSLALTSIY KELWHACAGP LTSLPKKGNV VVYFPQGHME EAVSAFPFSP
101: IKIDFPTFGL QPQIFCRVED VQLLANKEND EVYTQLTLLP LPESMAISLE GKEHEDSGTD EEGNGVNPGK SASHMFCKTL TASDTSTHGG FSVPRRAAED
201: CFPPLDYKEQ RPSQELIAKD LHGVEWKFRH IYRGQPRRHL LTTGWSIFVS QKNLVSGDAV LFLRGEGGDL RLGIRRAARP RNGLPESIIK SQYSGPDVLS
301: SVASALSAKS TFHVFYSPRA SHADFVVPYQ KYVKAINTRI PVGTRFKMKF DLDDSPERRY SGVVTGISDM DPFRWPNSKW RCLMVRWDED IMSNHQERVS
401: PWEIDSSVSL PPLSIQSSPR LKKLRTSQQA PSVLDGHFAG GSALLDFEES IRSSKVLQGQ ENLGLISPPY GCDKPVRPLD FELQRVARHN LMPNGVENII
501: VGDFVKTQPP TTYTGFLESN RFPKVLQGQE ICSLRSLTGK GDVNFGAWGK PEFGCNVFGT YQRPRANFYP LASEGARNVF LPYNAMYRAG QDPVVPSYIT
601: TFQRENPTLN QNSIQNVVRR EEVGMPKFVN EQRPPEMSKV SIPENHFKNE NDGSFNAQAS CKLFGFSLTK EPSTPSSQSS GKRSCTKVHK QGSLVGRAID
701: LSRLNGYDDL LVELERLFNM EDLLRDPNKG WRILYTDSEN DMMVVGDDPW HEFCEVVSKI HIYTQEEVEK MTIEGISDDT QSCLEEAPAI MDVSKSSSVG
801: QPDSSPTVIR I

Best Arabidopsis Sequence Match ( AT5G60450.1 )
(BLAST)

001: MEFDLNTEIA EVEEEENDDV GVGVGGGTRI DKGRLGISPS SSSSCSSGSS SSSSSTGSAS SIYSELWHAC AGPLTCLPKK GNVVVYFPQG HLEQDAMVSY
101: SSPLEIPKFD LNPQIVCRVV NVQLLANKDT DEVYTQVTLL PLQEFSMLNG EGKEVKELGG EEERNGSSSV KRTPHMFCKT LTASDTSTHG GFSVPRRAAE
201: DCFAPLDYKQ QRPSQELIAK DLHGVEWKFR HIYRGQPRRH LLTTGWSIFV SQKNLVSGDA VLFLRDEGGE LRLGIRRAAR PRNGLPDSII EKNSCSNILS
301: LVANAVSTKS MFHVFYSPRA THAEFVIPYE KYITSIRSPV CIGTRFRMRF EMDDSPERRC AGVVTGVCDL DPYRWPNSKW RCLLVRWDES FVSDHQERVS
401: PWEIDPSVSL PHLSIQSSPR PKRPWAGLLD TTPPGNPITK RGGFLDFEES VRPSKVLQGQ ENIGSASPSQ GFDVMNRRIL DFAMQSHANP VLVSSRVKDR
501: FGEFVDATGV NPACSGVMDL DRFPRVLQGQ EICSLKSFPQ FAGFSPAAAP NPFAYQANKS SYYPLALHGI RSTHVPYQNP YNAGNQSSGP PSRAINFGEE
601: TRKFDAQNEG GLPNNVTADL PFKIDMMGKQ KGSELNMNAS SGCKLFGFSL PVETPASKPQ SSSKRICTKV HKQGSQVGRA IDLSRLNGYD DLLMELERLF
701: NMEGLLRDPE KGWRILYTDS ENDMMVVGDD PWHDFCNVVW KIHLYTKEEV ENANDDNKSC LEQAALMMEA SKSSSVSQPD SSPTITRV

Arabidopsis Description

ARF4Auxin response factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.