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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g047460.2.1 Tomato nucleus 97.45 97.45
PGSC0003DMT400025312 Potato nucleus 79.58 78.37
VIT_11s0065g00310.t01 Wine grape nucleus 72.83 71.66
KRH49070 Soybean nucleus 66.27 65.5
KRH74145 Soybean nucleus 63.72 63.32
KRH60117 Soybean nucleus 61.44 61.33
KRH41404 Soybean nucleus 61.71 60.83
GSMUA_Achr3P05460_001 Banana nucleus 53.05 59.81
GSMUA_Achr9P14090_001 Banana nucleus 49.32 59.45
Os08t0520550-01 Rice nucleus 33.82 58.24
Os08t0520500-01 Rice cytosol 2.64 58.0
Os06t0702600-01 Rice nucleus 51.87 57.42
GSMUA_Achr5P05010_001 Banana nucleus 43.85 55.22
GSMUA_Achr6P01740_001 Banana nucleus 51.41 54.28
GSMUA_Achr8P23850_001 Banana nucleus 51.41 52.86
TraesCS7D01G250100.4 Wheat nucleus 52.23 52.47
TraesCS7A01G252000.2 Wheat nucleus 51.87 52.35
Os02t0141100-00 Rice nucleus 53.24 52.33
Zm00001d031522_P007 Maize nucleus 51.69 52.21
EER90336 Sorghum nucleus 55.06 52.11
TraesCS7B01G138900.6 Wheat nucleus 51.96 52.1
HORVU7Hr1G051930.4 Barley nucleus 51.41 52.08
EES15359 Sorghum nucleus 51.6 51.69
TraesCS6D01G102300.1 Wheat nucleus 53.05 51.55
TraesCS6B01G141300.2 Wheat nucleus 52.96 51.37
TraesCS6A01G113000.1 Wheat nucleus 53.14 51.37
TraesCS7D01G409700.1 Wheat nucleus 54.88 51.23
TraesCS7A01G416400.1 Wheat nucleus 54.69 51.15
TraesCS7B01G316600.1 Wheat nucleus 54.69 51.11
OQU84350 Sorghum nucleus 49.68 50.93
HORVU6Hr1G020330.30 Barley nucleus 52.96 50.92
Zm00001d014690_P014 Maize nucleus 54.42 50.0
HORVU7Hr1G096460.7 Barley mitochondrion, nucleus, vacuole 54.51 49.75
Zm00001d015243_P001 Maize nucleus 48.68 48.9
PGSC0003DMT400006151 Potato nucleus 46.4 43.99
PGSC0003DMT400041127 Potato nucleus 35.0 43.05
PGSC0003DMT400048034 Potato nucleus 28.62 41.76
PGSC0003DMT400074169 Potato nucleus 33.36 41.4
PGSC0003DMT400009660 Potato nucleus 33.82 39.94
PGSC0003DMT400048032 Potato nucleus 5.65 38.04
PGSC0003DMT400053380 Potato nucleus 21.7 36.39
PGSC0003DMT400031965 Potato nucleus 20.6 34.5
PGSC0003DMT400000345 Potato nucleus 21.33 34.16
PGSC0003DMT400037454 Potato nucleus 24.61 32.57
PGSC0003DMT400036765 Potato nucleus 24.16 31.36
PGSC0003DMT400020839 Potato nucleus 21.88 29.59
Protein Annotations
EntrezGene:102587769MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90InterPro:AUX/IAA_dom
InterPro:Auxin_respInterPro:B3_DNA-bdInterPro:DNA-bd_pseudobarrel_sfGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009725GO:GO:0009734GO:GO:0009987
InterPro:IPR000270InterPro:IPR003340InterPro:IPR015300UniProt:M1B2I2InterPro:PB1_domPFAM:PF02309
PFAM:PF02362PFAM:PF06507EnsemblPlantsGene:PGSC0003DMG400013686PGSC:PGSC0003DMG400013686EnsemblPlants:PGSC0003DMT400035592PFscan:PS50863
PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF9SMART:SM01019SUPFAM:SSF101936SUPFAM:SSF54277
UniParc:UPI000296F2A9RefSeq:XP_006360656.1RefSeq:XP_006360657.1SEG:seg::
Description
Auxin response factor 19 [Source:PGSC_GENE;Acc:PGSC0003DMG400013686]
Coordinates
chr5:-:43160552..43167160
Molecular Weight (calculated)
121267.0 Da
IEP (calculated)
6.479
GRAVY (calculated)
-0.583
Length
1097 amino acids
Sequence
(BLAST)
0001: MKTPGNGAGG GNVNPAEGEK KSINPELWQA CAGPLVNLPV AGTHVVYFPQ GHSEQVAASI KKDVEAQIPN YPNLPSKLIC LLHNVTLHAD PETDEVYAQM
0101: TLQPVPSFDK EALLRSDLSM KANKPQPEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD YSLQPPAQEL VARDLHDNIW TFRHVYRGQP KRHLLTTGWS
0201: LVVSGKRLFA GDSVLFIRDD KHQFLLGIRK ANRQPTNLSS SVLSSDSMHI GILAAAAHAA ANNSPFTVFY NPRAGPSEFV IPLAKYYKAT YSSQISLGMR
0301: FRMMFETEES GTRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESTAGER INRVSIWEIE PITAPFLICS SPFFSSKRPR QPGMPDGDYS DMDGMFKRTM
0401: PWLGDDFGMT DPQGLPGLSL IQWMNMQKNP SLANPMIPNY MNSLSGSALQ NLAGADLSRQ LGMAAPQFQQ QQMQHNLQFN NAHRPNQQLD QLQKLPAATL
0501: NPLDSIMQSQ QQLSDVSQQP RQNLTNQSLP TTQVHTQHMQ AQSLVQSQNV LPPQQSVQNQ NQLQRNLPQS LPQQHPQQQI LSQTQQQSFM PSQPPDPVNQ
0601: QQHFSDNQAQ LQMLQKLHQQ QKSLLAQQSG LQQPSQLGPI QDHQKQLMDA SQNFSRSLAT NQMLDASQTM STSLPHSQVV QQQQMTRINS PSNLRFSQST
0701: QQPKLQQQQS GNLSDLSGPV NYSLPRTSYQ LSTNGSNLTG TAGGGQSLVI DDVPSWSTSV STNNCHSVVQ PNMNGRITGA RDEMTHCSGP FEVMSANNNL
0801: QPKSDVKPSV NVVSKSQNHG FLAPQTLNTS GIQFDYLDSS SSATSACLSQ NDVQLQQTAT DPLSCSSQPL IFRDSPDGGE VQGDPRNNVA FGATNMNNNQ
0901: LGLPMIPDPL ITKSSMGSRK DFSDNLSSGG GMLSSYENPK EAQPELLASM ASEYVTFNSI DSTINDGSFM DRGAWEPPPQ LPRLRTYTKV YKRGAVGRSI
1001: DIARYSGYEE LKLDLARRFG IEGQLEDRQR IGWKLVYVDH EKDVLLVGDD PWEEFVSCVH CIKILSPQEV QQMSLDGDFG GSVLQNQDCS SSDAGDV
Best Arabidopsis Sequence Match ( AT5G20730.2 )
(BLAST)
0001: MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ
0101: PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN
0401: SLEMKDPSST IFPGLSLVQW MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL HNNLGGTDDP SKLLSFQTPH GGISSSNLQF NKQNQQAPMS QLPQPPTTLS
0501: QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS QQHSNNNQSQ SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ
0601: QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP PSSSLNQSFQ QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP
0701: QETQFSRQVE QQQPPGLNGQ NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPTLSQ GHQFPSSCTN
0801: NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA PSSSTSPSTN NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG
0901: QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR
1001: TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG
1101: DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW RGHYDDNSAT SFNR
Arabidopsis Description
NPH4Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related [Source:TAIR;Acc:AT5G20730]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.