Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc05g047460.2.1 | Tomato | nucleus | 97.45 | 97.45 |
PGSC0003DMT400025312 | Potato | nucleus | 79.58 | 78.37 |
VIT_11s0065g00310.t01 | Wine grape | nucleus | 72.83 | 71.66 |
KRH49070 | Soybean | nucleus | 66.27 | 65.5 |
KRH74145 | Soybean | nucleus | 63.72 | 63.32 |
KRH60117 | Soybean | nucleus | 61.44 | 61.33 |
KRH41404 | Soybean | nucleus | 61.71 | 60.83 |
GSMUA_Achr3P05460_001 | Banana | nucleus | 53.05 | 59.81 |
GSMUA_Achr9P14090_001 | Banana | nucleus | 49.32 | 59.45 |
Os08t0520550-01 | Rice | nucleus | 33.82 | 58.24 |
Os08t0520500-01 | Rice | cytosol | 2.64 | 58.0 |
Os06t0702600-01 | Rice | nucleus | 51.87 | 57.42 |
GSMUA_Achr5P05010_001 | Banana | nucleus | 43.85 | 55.22 |
GSMUA_Achr6P01740_001 | Banana | nucleus | 51.41 | 54.28 |
GSMUA_Achr8P23850_001 | Banana | nucleus | 51.41 | 52.86 |
TraesCS7D01G250100.4 | Wheat | nucleus | 52.23 | 52.47 |
TraesCS7A01G252000.2 | Wheat | nucleus | 51.87 | 52.35 |
Os02t0141100-00 | Rice | nucleus | 53.24 | 52.33 |
Zm00001d031522_P007 | Maize | nucleus | 51.69 | 52.21 |
EER90336 | Sorghum | nucleus | 55.06 | 52.11 |
TraesCS7B01G138900.6 | Wheat | nucleus | 51.96 | 52.1 |
HORVU7Hr1G051930.4 | Barley | nucleus | 51.41 | 52.08 |
EES15359 | Sorghum | nucleus | 51.6 | 51.69 |
TraesCS6D01G102300.1 | Wheat | nucleus | 53.05 | 51.55 |
TraesCS6B01G141300.2 | Wheat | nucleus | 52.96 | 51.37 |
TraesCS6A01G113000.1 | Wheat | nucleus | 53.14 | 51.37 |
TraesCS7D01G409700.1 | Wheat | nucleus | 54.88 | 51.23 |
TraesCS7A01G416400.1 | Wheat | nucleus | 54.69 | 51.15 |
TraesCS7B01G316600.1 | Wheat | nucleus | 54.69 | 51.11 |
OQU84350 | Sorghum | nucleus | 49.68 | 50.93 |
HORVU6Hr1G020330.30 | Barley | nucleus | 52.96 | 50.92 |
Zm00001d014690_P014 | Maize | nucleus | 54.42 | 50.0 |
HORVU7Hr1G096460.7 | Barley | mitochondrion, nucleus, vacuole | 54.51 | 49.75 |
Zm00001d015243_P001 | Maize | nucleus | 48.68 | 48.9 |
PGSC0003DMT400006151 | Potato | nucleus | 46.4 | 43.99 |
PGSC0003DMT400041127 | Potato | nucleus | 35.0 | 43.05 |
PGSC0003DMT400048034 | Potato | nucleus | 28.62 | 41.76 |
PGSC0003DMT400074169 | Potato | nucleus | 33.36 | 41.4 |
PGSC0003DMT400009660 | Potato | nucleus | 33.82 | 39.94 |
PGSC0003DMT400048032 | Potato | nucleus | 5.65 | 38.04 |
PGSC0003DMT400053380 | Potato | nucleus | 21.7 | 36.39 |
PGSC0003DMT400031965 | Potato | nucleus | 20.6 | 34.5 |
PGSC0003DMT400000345 | Potato | nucleus | 21.33 | 34.16 |
PGSC0003DMT400037454 | Potato | nucleus | 24.61 | 32.57 |
PGSC0003DMT400036765 | Potato | nucleus | 24.16 | 31.36 |
PGSC0003DMT400020839 | Potato | nucleus | 21.88 | 29.59 |
Protein Annotations
EntrezGene:102587769 | MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom |
InterPro:Auxin_resp | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 |
InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:M1B2I2 | InterPro:PB1_dom | PFAM:PF02309 |
PFAM:PF02362 | PFAM:PF06507 | EnsemblPlantsGene:PGSC0003DMG400013686 | PGSC:PGSC0003DMG400013686 | EnsemblPlants:PGSC0003DMT400035592 | PFscan:PS50863 |
PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF9 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 |
UniParc:UPI000296F2A9 | RefSeq:XP_006360656.1 | RefSeq:XP_006360657.1 | SEG:seg | : | : |
Description
Auxin response factor 19 [Source:PGSC_GENE;Acc:PGSC0003DMG400013686]
Coordinates
chr5:-:43160552..43167160
Molecular Weight (calculated)
121267.0 Da
IEP (calculated)
6.479
GRAVY (calculated)
-0.583
Length
1097 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKTPGNGAGG GNVNPAEGEK KSINPELWQA CAGPLVNLPV AGTHVVYFPQ GHSEQVAASI KKDVEAQIPN YPNLPSKLIC LLHNVTLHAD PETDEVYAQM
0101: TLQPVPSFDK EALLRSDLSM KANKPQPEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD YSLQPPAQEL VARDLHDNIW TFRHVYRGQP KRHLLTTGWS
0201: LVVSGKRLFA GDSVLFIRDD KHQFLLGIRK ANRQPTNLSS SVLSSDSMHI GILAAAAHAA ANNSPFTVFY NPRAGPSEFV IPLAKYYKAT YSSQISLGMR
0301: FRMMFETEES GTRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESTAGER INRVSIWEIE PITAPFLICS SPFFSSKRPR QPGMPDGDYS DMDGMFKRTM
0401: PWLGDDFGMT DPQGLPGLSL IQWMNMQKNP SLANPMIPNY MNSLSGSALQ NLAGADLSRQ LGMAAPQFQQ QQMQHNLQFN NAHRPNQQLD QLQKLPAATL
0501: NPLDSIMQSQ QQLSDVSQQP RQNLTNQSLP TTQVHTQHMQ AQSLVQSQNV LPPQQSVQNQ NQLQRNLPQS LPQQHPQQQI LSQTQQQSFM PSQPPDPVNQ
0601: QQHFSDNQAQ LQMLQKLHQQ QKSLLAQQSG LQQPSQLGPI QDHQKQLMDA SQNFSRSLAT NQMLDASQTM STSLPHSQVV QQQQMTRINS PSNLRFSQST
0701: QQPKLQQQQS GNLSDLSGPV NYSLPRTSYQ LSTNGSNLTG TAGGGQSLVI DDVPSWSTSV STNNCHSVVQ PNMNGRITGA RDEMTHCSGP FEVMSANNNL
0801: QPKSDVKPSV NVVSKSQNHG FLAPQTLNTS GIQFDYLDSS SSATSACLSQ NDVQLQQTAT DPLSCSSQPL IFRDSPDGGE VQGDPRNNVA FGATNMNNNQ
0901: LGLPMIPDPL ITKSSMGSRK DFSDNLSSGG GMLSSYENPK EAQPELLASM ASEYVTFNSI DSTINDGSFM DRGAWEPPPQ LPRLRTYTKV YKRGAVGRSI
1001: DIARYSGYEE LKLDLARRFG IEGQLEDRQR IGWKLVYVDH EKDVLLVGDD PWEEFVSCVH CIKILSPQEV QQMSLDGDFG GSVLQNQDCS SSDAGDV
0101: TLQPVPSFDK EALLRSDLSM KANKPQPEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD YSLQPPAQEL VARDLHDNIW TFRHVYRGQP KRHLLTTGWS
0201: LVVSGKRLFA GDSVLFIRDD KHQFLLGIRK ANRQPTNLSS SVLSSDSMHI GILAAAAHAA ANNSPFTVFY NPRAGPSEFV IPLAKYYKAT YSSQISLGMR
0301: FRMMFETEES GTRRYMGTIT GISDLDPVRW KNSQWRNLQV GWDESTAGER INRVSIWEIE PITAPFLICS SPFFSSKRPR QPGMPDGDYS DMDGMFKRTM
0401: PWLGDDFGMT DPQGLPGLSL IQWMNMQKNP SLANPMIPNY MNSLSGSALQ NLAGADLSRQ LGMAAPQFQQ QQMQHNLQFN NAHRPNQQLD QLQKLPAATL
0501: NPLDSIMQSQ QQLSDVSQQP RQNLTNQSLP TTQVHTQHMQ AQSLVQSQNV LPPQQSVQNQ NQLQRNLPQS LPQQHPQQQI LSQTQQQSFM PSQPPDPVNQ
0601: QQHFSDNQAQ LQMLQKLHQQ QKSLLAQQSG LQQPSQLGPI QDHQKQLMDA SQNFSRSLAT NQMLDASQTM STSLPHSQVV QQQQMTRINS PSNLRFSQST
0701: QQPKLQQQQS GNLSDLSGPV NYSLPRTSYQ LSTNGSNLTG TAGGGQSLVI DDVPSWSTSV STNNCHSVVQ PNMNGRITGA RDEMTHCSGP FEVMSANNNL
0801: QPKSDVKPSV NVVSKSQNHG FLAPQTLNTS GIQFDYLDSS SSATSACLSQ NDVQLQQTAT DPLSCSSQPL IFRDSPDGGE VQGDPRNNVA FGATNMNNNQ
0901: LGLPMIPDPL ITKSSMGSRK DFSDNLSSGG GMLSSYENPK EAQPELLASM ASEYVTFNSI DSTINDGSFM DRGAWEPPPQ LPRLRTYTKV YKRGAVGRSI
1001: DIARYSGYEE LKLDLARRFG IEGQLEDRQR IGWKLVYVDH EKDVLLVGDD PWEEFVSCVH CIKILSPQEV QQMSLDGDFG GSVLQNQDCS SSDAGDV
0001: MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ
0101: PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN
0401: SLEMKDPSST IFPGLSLVQW MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL HNNLGGTDDP SKLLSFQTPH GGISSSNLQF NKQNQQAPMS QLPQPPTTLS
0501: QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS QQHSNNNQSQ SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ
0601: QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP PSSSLNQSFQ QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP
0701: QETQFSRQVE QQQPPGLNGQ NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPTLSQ GHQFPSSCTN
0801: NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA PSSSTSPSTN NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG
0901: QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR
1001: TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG
1101: DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW RGHYDDNSAT SFNR
0101: PVNKYDRDAL LASDMGLKLN RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR HIYRGQPKRH LLTTGWSVFV
0201: STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI
0301: FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN
0401: SLEMKDPSST IFPGLSLVQW MNMQQQNGQL PSAAAQPGFF PSMLSPTAAL HNNLGGTDDP SKLLSFQTPH GGISSSNLQF NKQNQQAPMS QLPQPPTTLS
0501: QQQQLQQLLH SSLNHQQQQS QSQQQQQQQQ LLQQQQQLQS QQHSNNNQSQ SQQQQQLLQQ QQQQQLQQQH QQPLQQQTQQ QQLRTQPLQS HSHPQPQQLQ
0601: QHKLQQLQVP QNQLYNGQQA AQQHQSQQAS THHLQPQLVS GSMASSVITP PSSSLNQSFQ QQQQQSKQLQ QAHHHLGAST SQSSVIETSK SSSNLMSAPP
0701: QETQFSRQVE QQQPPGLNGQ NQQTLLQQKA HQAQAQQIFQ QSLLEQPHIQ FQLLQRLQQQ QQQQFLSPQS QLPHHQLQSQ QLQQLPTLSQ GHQFPSSCTN
0801: NGLSTLQPPQ MLVSRPQEKQ NPPVGGGVKA YSGITDGGDA PSSSTSPSTN NCQISSSGFL NRSQSGPAIL IPDAAIDMSG NLVQDLYSKS DMRLKQELVG
0901: QQKSKASLTD HQLEASASGT SYGLDGGENN RQQNFLAPTF GLDGDSRNSL LGGANVDNGF VPDTLLSRGY DSQKDLQNML SNYGGVTNDI GTEMSTSAVR
1001: TQSFGVPNVP AISNDLAVND AGVLGGGLWP AQTQRMRTYT KVQKRGSVGR SIDVNRYRGY DELRHDLARM FGIEGQLEDP QTSDWKLVYV DHENDILLVG
1101: DDPWEEFVNC VQSIKILSSA EVQQMSLDGN FAGVPVTNQA CSGGDSGNAW RGHYDDNSAT SFNR
Arabidopsis Description
NPH4Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related [Source:TAIR;Acc:AT5G20730]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.