Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g081240.2.1 | Tomato | nucleus | 97.52 | 97.42 |
| Bra025775.1-P | Field mustard | nucleus | 40.15 | 79.36 |
| VIT_18s0001g13930.t01 | Wine grape | nucleus | 67.17 | 65.48 |
| Bra016492.1-P | Field mustard | nucleus | 55.87 | 62.08 |
| CDY62586 | Canola | nucleus | 56.4 | 61.94 |
| CDX83741 | Canola | nucleus | 56.19 | 61.7 |
| CDY61164 | Canola | nucleus | 57.05 | 61.56 |
| AT1G19850.1 | Thale cress | nucleus | 59.53 | 61.31 |
| KRH05923 | Soybean | nucleus | 61.46 | 61.2 |
| CDY29392 | Canola | nucleus | 57.7 | 61.19 |
| CDY39348 | Canola | nucleus | 57.8 | 61.09 |
| KRH17404 | Soybean | nucleus | 61.14 | 61.08 |
| CDY01393 | Canola | nucleus | 56.84 | 61.04 |
| Bra012190.1-P | Field mustard | nucleus | 56.94 | 61.02 |
| GSMUA_Achr1P20040_001 | Banana | nucleus | 44.89 | 53.32 |
| GSMUA_Achr6P36980_001 | Banana | nucleus | 44.89 | 48.6 |
| Os04t0664400-01 | Rice | nucleus | 43.92 | 44.35 |
| EES13038 | Sorghum | nucleus | 43.92 | 43.13 |
| TraesCS2D01G491200.2 | Wheat | nucleus | 43.92 | 42.72 |
| TraesCS2B01G519200.2 | Wheat | nucleus | 43.92 | 42.72 |
| TraesCS2A01G491000.1 | Wheat | nucleus | 43.81 | 42.62 |
| HORVU2Hr1G109650.18 | Barley | nucleus | 43.7 | 42.42 |
| Zm00001d001945_P002 | Maize | nucleus | 43.27 | 42.41 |
| Zm00001d026540_P002 | Maize | nucleus | 43.49 | 42.13 |
| PGSC0003DMT400041127 | Potato | nucleus | 39.83 | 41.48 |
| GSMUA_Achr1P20000_001 | Banana | nucleus | 43.16 | 41.3 |
| PGSC0003DMT400074169 | Potato | nucleus | 38.21 | 40.16 |
| PGSC0003DMT400048034 | Potato | nucleus | 31.0 | 38.3 |
| PGSC0003DMT400048032 | Potato | nucleus | 6.67 | 38.04 |
| GSMUA_Achr1P20010_001 | Banana | plasma membrane, plastid | 42.3 | 37.43 |
| PGSC0003DMT400053380 | Potato | nucleus | 25.73 | 36.54 |
| PGSC0003DMT400025312 | Potato | nucleus | 41.77 | 34.83 |
| PGSC0003DMT400000345 | Potato | nucleus | 24.97 | 33.87 |
| PGSC0003DMT400035592 | Potato | nucleus | 39.94 | 33.82 |
| PGSC0003DMT400031965 | Potato | nucleus | 23.57 | 33.44 |
| PGSC0003DMT400006151 | Potato | nucleus | 40.37 | 32.41 |
| PGSC0003DMT400036765 | Potato | nucleus | 28.31 | 31.12 |
| PGSC0003DMT400037454 | Potato | nucleus | 27.66 | 31.0 |
| PGSC0003DMT400020839 | Potato | nucleus | 25.51 | 29.22 |
Protein Annotations
Description
Auxin response factor 5 [Source:PGSC_GENE;Acc:PGSC0003DMG400003771]
Coordinates
chr4:-:70600273..70606494
Molecular Weight (calculated)
102946.0 Da
IEP (calculated)
5.496
GRAVY (calculated)
-0.426
Length
929 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVEEKNKP GSLVSGAHTL LEEMKLLKGM QDHTGGGRKH ISSELWHACA GPLVTLPQVG SLVYYFPQGH SEQVAVSTNR TATSQIPNYP NLASQLLCQV
101: HNVTLHADKE TDEIYAQMSL QPVNSEKDVF PIPDFGLKPN KHPTEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYSM QPPTQELVVR DLHDNTWTFR
201: HIYRGQPKRH LLTTGWSMFV GAKRLRAGDS VLFIRDEKSQ LLLGVRRANR QQTSLPSSVL SADSMHIGVL AAAAHAAANR STFTIFYNPR ACPSEFVIPL
301: AKYRKSVYNT QLSVGMRFGM MFETEESGKR RYMGTISGIS DLDPLRWPGS KWRCLQVEWD EPGCGDKQNR VSPWEVETPE SLFIFPSLTA GLKRPYQSTF
401: LGAPTEWDSL MQHRPFMRVP ENVYGDLQSS SISNLWSEQL MKMLIRPPPG LTGLQCGVPT VQDIKVALPQ EARNVIQPAG NQKPELITVE ATPAQSETNS
501: EVILNQPVGV VNSISSQQAT LQAKSQPLEK VETDVIGKSY EPRKETCNSS VKLDQFQCNE DKVTIKPASP HDLPTASATA SHHNSFSQLQ ATPWLIPHNP
601: QIDSAGSNNI LQCPTNNEWN LSSLQSAAGL LRYPVSTSTL TKHDNSFMLP DTIGHGLAPI GQDLWDHQLN DVKCFSQTNL QVPLDITNMQ FLPDSYDFKD
701: LSEESHNQSD IYSCLNFDSN SGSTVIDNSV SSTVLDEFCN LKHTDFQNPS DFLLGNISSS QDVQSQITSA SLADSQNFSV QEFADNSGGA SSSNVNFDEC
801: NLLQNSSWQQ VAPRVRTFTK IQKTGSVGRS IDVSGFKNYE ELRSEIERMF GLEGLLNDTR GSSWKLVYVD FEHDVLLVGD DPWEEFVGCV RCIRILSPTE
901: VQQMGEEGMQ LLNSAGLQGI NGSTSEFPN
101: HNVTLHADKE TDEIYAQMSL QPVNSEKDVF PIPDFGLKPN KHPTEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYSM QPPTQELVVR DLHDNTWTFR
201: HIYRGQPKRH LLTTGWSMFV GAKRLRAGDS VLFIRDEKSQ LLLGVRRANR QQTSLPSSVL SADSMHIGVL AAAAHAAANR STFTIFYNPR ACPSEFVIPL
301: AKYRKSVYNT QLSVGMRFGM MFETEESGKR RYMGTISGIS DLDPLRWPGS KWRCLQVEWD EPGCGDKQNR VSPWEVETPE SLFIFPSLTA GLKRPYQSTF
401: LGAPTEWDSL MQHRPFMRVP ENVYGDLQSS SISNLWSEQL MKMLIRPPPG LTGLQCGVPT VQDIKVALPQ EARNVIQPAG NQKPELITVE ATPAQSETNS
501: EVILNQPVGV VNSISSQQAT LQAKSQPLEK VETDVIGKSY EPRKETCNSS VKLDQFQCNE DKVTIKPASP HDLPTASATA SHHNSFSQLQ ATPWLIPHNP
601: QIDSAGSNNI LQCPTNNEWN LSSLQSAAGL LRYPVSTSTL TKHDNSFMLP DTIGHGLAPI GQDLWDHQLN DVKCFSQTNL QVPLDITNMQ FLPDSYDFKD
701: LSEESHNQSD IYSCLNFDSN SGSTVIDNSV SSTVLDEFCN LKHTDFQNPS DFLLGNISSS QDVQSQITSA SLADSQNFSV QEFADNSGGA SSSNVNFDEC
801: NLLQNSSWQQ VAPRVRTFTK IQKTGSVGRS IDVSGFKNYE ELRSEIERMF GLEGLLNDTR GSSWKLVYVD FEHDVLLVGD DPWEEFVGCV RCIRILSPTE
901: VQQMGEEGMQ LLNSAGLQGI NGSTSEFPN
001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
Arabidopsis Description
ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.