Factsheet for PGSC0003DMT400041127

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g043620.2.1	Tomato	nucleus	57.17	97.14
PGSC0003DMT400074169	Potato	nucleus	79.04	79.75
KRH73577	Soybean	nucleus	70.07	69.75
VIT_12s0028g01170.t01	Wine grape	nucleus	72.31	69.58
KRH14545	Soybean	nucleus	69.39	69.08
PGSC0003DMT400048032	Potato	nucleus	10.54	57.67
PGSC0003DMT400048034	Potato	nucleus	46.97	55.72
GSMUA_Achr1P08230_001	Banana	mitochondrion	35.43	47.59
PGSC0003DMT400009660	Potato	nucleus	41.48	39.83
PGSC0003DMT400053380	Potato	nucleus	28.14	38.38
PGSC0003DMT400025312	Potato	nucleus	44.28	35.46
PGSC0003DMT400000345	Potato	nucleus	27.02	35.18
PGSC0003DMT400035592	Potato	nucleus	43.05	35.0
PGSC0003DMT400031965	Potato	nucleus	25.22	34.35
PGSC0003DMT400006151	Potato	nucleus	44.06	33.97
PGSC0003DMT400037454	Potato	nucleus	30.38	32.69
PGSC0003DMT400036765	Potato	nucleus	30.49	32.19
PGSC0003DMT400020839	Potato	nucleus	27.91	30.7

Protein Annotations

EntrezGene:102606235	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	UniProt:M1BAY7	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507
EnsemblPlantsGene:PGSC0003DMG400015919	PGSC:PGSC0003DMG400015919	EnsemblPlants:PGSC0003DMT400041127	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF68	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002959C32	RefSeq:XP_006357893.1
SEG:seg	:	:	:	:	:

Description

ARF8 [Source:PGSC_GENE;Acc:PGSC0003DMG400015919]

Coordinates

chr7:-:42117703..42125496

Molecular Weight (calculated)

98784.5 Da

IEP (calculated)

6.418

GRAVY (calculated)

-0.436

Length

892 amino acids

Sequence
(BLAST)

001: MRVSSSGFNP QQEEAGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNK EVDAHIPNYP GLPPQLICQL HNLTMHADVE TDEVYAQMTL
101: QPLSPQEQKD VCLLPAELGI PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPCQELI AKDLHGNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DAVIFIWNEN NQLLLGIRRA NRPQTVMPSS VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYAKAVY HTRISVGMRF
301: RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FSLRLKRPWP SGLPSLPGFP NGDMTMNSPL
401: SWLRGDMGDQ GMQSLNFQGF GVTPFMQPRM DASMLGLQPD ILQTMAALDP SKLANQSLMQ FQHSIPNSSA PLSQSQMLQP SHSQQNLIQG FSENHLISQA
501: QMLQQQLQRR QNFNDQQQLL QPQLQRHQEV NSQFQHQQQT KTISGLSQMA SATHPHLSHL QVLSSTGSPQ TFSDILGNHV NASSNSNMQS LLSSFSCDGA
601: STVLNVHETH PLVSSSSSSK RIALESQLPS RVTPFVVSQP EDVIAHNTKV SDLSSLLPPF PSRESFSDYR GVEDSQSNAL YGFTDSLNIL QTGMSNMKGS
701: SGDNGSLSIP YATSTFTSTV GNEYPLNSDM TASSCVDESG FLQSSENGDQ ANPTNRIFVK VQKSGSFGRS LDISKFSSYH ELRSELARMF GLEGLLEDPE
801: RSGWQLVIVD RENDVLLLGD DPWQEFVNNV WYIKILSPHE VQQMGKEGLD LPNGVQAQTQ TLPGNVNGCD DYMNQKGSRN TMNGIPLGSL DY

Best Arabidopsis Sequence Match ( AT1G30330.2 )
(BLAST)

001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.