Factsheet for PGSC0003DMT400048032

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048034	Potato	nucleus	100.0	21.68
PGSC0003DMT400074169	Potato	nucleus	58.9	10.86
PGSC0003DMT400041127	Potato	nucleus	57.67	10.54
PGSC0003DMT400009660	Potato	nucleus	38.04	6.67
PGSC0003DMT400025312	Potato	nucleus	41.1	6.01
PGSC0003DMT400000345	Potato	nucleus	24.54	5.84
PGSC0003DMT400053380	Potato	nucleus	23.31	5.81
PGSC0003DMT400035592	Potato	nucleus	38.04	5.65
PGSC0003DMT400006151	Potato	nucleus	39.26	5.53
PGSC0003DMT400031965	Potato	nucleus	21.47	5.34
PGSC0003DMT400020839	Potato	nucleus	25.77	5.18
PGSC0003DMT400036765	Potato	nucleus	25.77	4.97
PGSC0003DMT400037454	Potato	nucleus	23.93	4.7
Zm00001d052637_P001	Maize	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	UniProt:M1BLU6	InterPro:PB1_dom
PFAM:PF02309	EnsemblPlantsGene:PGSC0003DMG402018664	PGSC:PGSC0003DMG402018664	EnsemblPlants:PGSC0003DMT400048032	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF2	SUPFAM:SSF54277	UniParc:UPI000295D6CA	:	:	:

Description

Auxin response factor 8-1 [Source:PGSC_GENE;Acc:PGSC0003DMG402018664]

Coordinates

chr3:+:2962613..2963831

Molecular Weight (calculated)

18324.4 Da

IEP (calculated)

4.317

GRAVY (calculated)

-0.454

Length

163 amino acids

Sequence
(BLAST)

001: MPLGTSGFSN SLYGYVQDSS DMLHNVGQVD AQTAPRTFVK VYKSASLGRS LDITRFNSYH ELRQELGQMF GIEGFLEDPQ RSGWQLVFVD RENDVLLLGD
101: DPWEEFVNNV WYIKILSPED VQKLGKEEVG SLNRGLPERM SSNNSADGRD FMSGLSSIGS LEY

Best Arabidopsis Sequence Match ( AT1G30330.1 )
(BLAST)

001: MRLSSAGFNP QPHEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ
101: PLNAQEQKDP YLPAELGVPS RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELMAR DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PQTVMPSSVL SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM
301: LFETEESSVR RYMGTITGIC DLDPTRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT TFPMYPSPFP LRLKRPWPPG LPSFHGLKED DMGMSMSSPL
401: MWDRGLQSLN FQGMGVNPWM QPRLDTSGLL GMQNDVYQAM AAAALQDMRG IDPAKAAASL LQFQNSPGFS MQSPSLVQPQ MLQQQLSQQQ QQLSQQQQQQ
501: QQLSQQQQQQ LSQQQQQQLS QQQQQQLSQQ QQQQAYLGVP ETHQPQSQAQ SQSNNHLSQQ QQQVVDNHNP SASSAAVVSA MSQFGSASQP NTSPLQSMTS
601: LCHQQSFSDT NGGNNPISPL HTLLSNFSQD ESSQLLHLTR TNSAMTSSGW PSKRPAVDSS FQHSGAGNNN TQSVLEQLGQ SHTSNVPPNA VSLPPFPGGR
701: ECSIEQEGSA SDPHSHLLFG VNIDSSSLLM PNGMSNLRSI GIEGGDSTTL PFTSSNFNND FSGNLAMTTP SSCIDESGFL QSSENLGSEN PQSNTFVKVY
801: KSGSFGRSLD ISKFSSYHEL RSELARMFGL EGQLEDPVRS GWQLVFVDRE NDVLLLGDDP WPEFVSSVWC IKILSPQEVQ QMGKRGLELL NSAPSSNNVD
901: KLPSNGNCDD FGNRSDPRNL GNGIASVGGS FNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.