Factsheet for PGSC0003DMT400048034

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006800
PGSC0003DMT400015610
PGSC0003DMT400015655
PGSC0003DMT400034978
PGSC0003DMT400035770
PGSC0003DMT400042074
PGSC0003DMT400042572
PGSC0003DMT400052767

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37020.1	PGSC0003DMT400015610	AT1G04250.1	21734647
AT5G37020.1	PGSC0003DMT400006800	AT1G52830.1	14729917
AT5G37020.1	PGSC0003DMT400042572	AT1G52830.1	14729917
AT5G37020.1	PGSC0003DMT400006800	AT3G15540.1	14729917
AT5G37020.1	PGSC0003DMT400042572	AT3G15540.1	14729917
AT5G37020.1	PGSC0003DMT400006800	AT3G15540.1	21734647
AT5G37020.1	PGSC0003DMT400042572	AT3G15540.1	21734647
AT5G37020.1	PGSC0003DMT400015610	AT3G23050.1	21734647
AT5G37020.1	PGSC0003DMT400015655	AT4G14560.1	14729917
AT5G37020.1	PGSC0003DMT400034978	AT4G14560.1	14729917
AT5G37020.1	PGSC0003DMT400042074	AT4G14560.1	14729917
AT5G37020.1	PGSC0003DMT400015655	AT4G14560.1	21734647
AT5G37020.1	PGSC0003DMT400034978	AT4G14560.1	21734647
AT5G37020.1	PGSC0003DMT400042074	AT4G14560.1	21734647
AT5G37020.1	PGSC0003DMT400035770	AT4G32280.1	21734647
AT5G37020.1	PGSC0003DMT400052767	AT4G32280.1	21734647
AT5G37020.1	PGSC0003DMT400015655	AT5G43700.1	21734647
AT5G37020.1	PGSC0003DMT400034978	AT5G43700.1	21734647
AT5G37020.1	PGSC0003DMT400042074	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048032	Potato	nucleus	21.68	100.0
Solyc03g031970.2.1	Tomato	nucleus	95.61	85.19
VIT_04s0079g00200.t01	Wine grape	nucleus	59.44	63.22
KRH17251	Soybean	nucleus	70.21	62.63
KRH30740	Soybean	nucleus	70.21	62.56
KRH72896	Soybean	nucleus	70.35	62.46
KRG98044	Soybean	nucleus	69.28	61.95
AT5G37020.1	Thale cress	nucleus	61.17	56.72
CDY53537	Canola	nucleus	61.3	56.63
CDX74594	Canola	nucleus	61.57	56.53
CDY39274	Canola	nucleus	57.18	55.2
GSMUA_Achr4P25960_001	Banana	nucleus	58.51	54.93
Bra028110.1-P	Field mustard	nucleus	61.57	54.86
CDY07460	Canola	nucleus	56.91	54.8
Bra004125.1-P	Field mustard	nucleus	56.78	54.74
GSMUA_Achr11P...	Banana	nucleus	58.51	54.32
Os04t0671900-01	Rice	nucleus	58.91	54.16
Zm00001d001879_P036	Maize	nucleus	58.64	53.98
KXG27404	Sorghum	nucleus	58.64	53.85
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	21.28	53.51
HORVU2Hr1G121110.32	Barley	nucleus	58.51	52.51
TraesCS2A01G547800.1	Wheat	nucleus	57.98	52.47
TraesCS2D01G548900.1	Wheat	nucleus	57.98	52.34
TraesCS2B01G578500.1	Wheat	nucleus	57.85	52.22
Zm00001d026590_P003	Maize	nucleus	55.45	49.17
GSMUA_AchrUn_...	Banana	mitochondrion	33.24	48.92
PGSC0003DMT400041127	Potato	nucleus	55.72	46.97
PGSC0003DMT400074169	Potato	nucleus	54.39	46.27
GSMUA_Achr8P13620_001	Banana	nucleus	27.13	42.15
PGSC0003DMT400009660	Potato	nucleus	38.3	31.0
PGSC0003DMT400053380	Potato	nucleus	26.6	30.58
PGSC0003DMT400025312	Potato	nucleus	44.28	29.89
PGSC0003DMT400000345	Potato	nucleus	26.73	29.34
PGSC0003DMT400031965	Potato	nucleus	25.53	29.31
PGSC0003DMT400035592	Potato	nucleus	41.76	28.62
PGSC0003DMT400006151	Potato	nucleus	43.75	28.44
PGSC0003DMT400037454	Potato	nucleus	27.79	25.21
PGSC0003DMT400036765	Potato	nucleus	28.19	25.09
PGSC0003DMT400020839	Potato	nucleus	26.33	24.41

Protein Annotations

EntrezGene:102597704	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733
GO:GO:0009734	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0043565	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	UniProt:M1BLU8	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507
EnsemblPlantsGene:PGSC0003DMG401018664	PGSC:PGSC0003DMG401018664	EnsemblPlants:PGSC0003DMT400048034	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF2	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000294A5DF	RefSeq:XP_006343313.1
RefSeq:XP_015162339.1	SEG:seg	:	:	:	:

Description

Auxin response factor 8-1 [Source:PGSC_GENE;Acc:PGSC0003DMG401018664]

Coordinates

chr3:+:2955745..2964135

Molecular Weight (calculated)

84282.2 Da

IEP (calculated)

6.471

GRAVY (calculated)

-0.511

Length

752 amino acids

Sequence
(BLAST)

001: MTLQPLTPQE QKDTYLPVEL GIPSRQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DFSQTPPCQE LIARDLHDIE WKFRHIFRGQ PKRHLLTTGW
101: SVFVSAKRLV AGDSVLFIWN EKNQLFLGIR RATRPQTVMP SSVLSSDSMH IGLLAAAAHA AATNSCFTVF FNPRASPSEF VIPLSKYIKA VYHTRVSVGM
201: RFRMLFETEE SSVRRYMGTI TGIGDLDPVR WANSHWRSVK VGWDESTAGE RQPRVSLWEI EPLTTFPMYP SLFPLRLKRP WYPGTSSFQE NNSEAINGMA
301: WLRGESSEQG PHLLNLQSFG GMLPWMQQRV DPTMLRNDLN QQYQAMLASG LQNFGSGDLM KQQLMQFPQP VQYVQHAGSL NPLLQQQQQQ QAMQQTIHQH
401: MLPAQTQDNL QRQQQQHVSN QTEEQSHHHS YQEAYQIPNS QLQQKQPSNV PSPSFSKPDI ADPSSKFSAS IAPSGMPTAL GSLCSEGTSN FLNFNILGQQ
501: PVIMEQQQQQ QQQQQKSWMA KFAHSQLNTG SNSPSLSGYG KDTSNSQETC SLDAQNQSLF GANVDSSGLL LPTTVSNVAT TSIDADISSM PLGTSGFSNS
601: LYGYVQDSSD MLHNVGQVDA QTAPRTFVKV YKSASLGRSL DITRFNSYHE LRQELGQMFG IEGFLEDPQR SGWQLVFVDR ENDVLLLGDD PWEEFVNNVW
701: YIKILSPEDV QKLGKEEVGS LNRGLPERMS SNNSADGRDF MSGLSSIGSL EY

Best Arabidopsis Sequence Match ( AT5G37020.1 )
(BLAST)

001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L

Arabidopsis Description

ARF8Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.