CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92429
KRG92430
KRG96613
KRH09813
KRH23504
KRH31615
KRH33660
KRH34375
KRH34377
KRH44390
KRH47514
KRH52428
KRH61758
KRH68346
KRH69048
KRH69143
KRH71336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37020.1	KRG92429	AT1G04250.1	21734647
AT5G37020.1	KRH34377	AT1G04250.1	21734647
AT5G37020.1	KRH09813	AT1G52830.1	14729917
AT5G37020.1	KRH23504	AT1G52830.1	14729917
AT5G37020.1	KRH44390	AT1G52830.1	14729917
AT5G37020.1	KRH47514	AT1G52830.1	14729917
AT5G37020.1	KRH31615	AT1G80390.1	21734647
AT5G37020.1	KRH71336	AT1G80390.1	21734647
AT5G37020.1	KRH09813	AT3G15540.1	14729917
AT5G37020.1	KRH23504	AT3G15540.1	14729917
AT5G37020.1	KRH44390	AT3G15540.1	14729917
AT5G37020.1	KRH47514	AT3G15540.1	14729917
AT5G37020.1	KRH09813	AT3G15540.1	21734647
AT5G37020.1	KRH23504	AT3G15540.1	21734647
AT5G37020.1	KRH44390	AT3G15540.1	21734647
AT5G37020.1	KRH47514	AT3G15540.1	21734647
AT5G37020.1	KRG92429	AT3G23050.1	21734647
AT5G37020.1	KRH34377	AT3G23050.1	21734647
AT5G37020.1	KRG96613	AT3G62100.1	21734647
AT5G37020.1	KRH33660	AT3G62100.1	21734647
AT5G37020.1	KRH68346	AT3G62100.1	21734647
AT5G37020.1	KRH69143	AT3G62100.1	21734647
AT5G37020.1	KRG92430	AT4G14560.1	14729917
AT5G37020.1	KRH34375	AT4G14560.1	14729917
AT5G37020.1	KRH69048	AT4G14560.1	14729917
AT5G37020.1	KRG92430	AT4G14560.1	21734647
AT5G37020.1	KRH34375	AT4G14560.1	21734647
AT5G37020.1	KRH69048	AT4G14560.1	21734647
AT5G37020.1	KRH52428	AT4G32280.1	21734647
AT5G37020.1	KRH61758	AT4G32280.1	21734647
AT5G37020.1	KRG92430	AT5G43700.1	21734647
AT5G37020.1	KRH34375	AT5G43700.1	21734647
AT5G37020.1	KRH69048	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30740	Soybean	nucleus	97.38	97.04
KRH17251	Soybean	nucleus	88.7	88.49
KRH72896	Soybean	nucleus	88.58	87.96
KRH58711	Soybean	nucleus	40.78	87.28
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	28.89	81.27
Solyc02g037530.2.1	Tomato	nucleus	73.36	73.28
Solyc03g031970.2.1	Tomato	nucleus	71.11	70.85
AT5G37020.1	Thale cress	nucleus	66.83	69.3
PGSC0003DMT400048034	Potato	nucleus	61.95	69.28
CDY53537	Canola	nucleus	66.47	68.67
CDX74594	Canola	nucleus	66.71	68.5
GSMUA_Achr4P25960_001	Banana	nucleus	64.57	67.79
CDY39274	Canola	nucleus	62.07	67.01
Bra004125.1-P	Field mustard	nucleus	61.95	66.79
CDY07460	Canola	nucleus	61.95	66.71
GSMUA_Achr11P...	Banana	nucleus	64.21	66.67
Bra028110.1-P	Field mustard	nucleus	66.59	66.35
VIT_04s0079g00200.t01	Wine grape	nucleus	55.29	65.77
Os04t0671900-01	Rice	nucleus	62.54	64.3
KXG27404	Sorghum	nucleus	62.54	64.22
Zm00001d001879_P036	Maize	nucleus	61.95	63.77
TraesCS2D01G548900.1	Wheat	nucleus	62.07	62.67
TraesCS2A01G547800.1	Wheat	nucleus	61.83	62.58
TraesCS2B01G578500.1	Wheat	nucleus	61.71	62.3
HORVU2Hr1G121110.32	Barley	nucleus	61.95	62.17
GSMUA_AchrUn_...	Banana	mitochondrion	37.1	61.06
Zm00001d026590_P003	Maize	nucleus	59.57	59.08
KRH11131	Soybean	nucleus	61.24	57.35
KRH73577	Soybean	nucleus	60.76	57.03
KRH21113	Soybean	nucleus	60.64	56.92
KRH42603	Soybean	nucleus	61.0	56.69
KRH14545	Soybean	nucleus	60.05	56.36
KRH22924	Soybean	nucleus	19.38	44.66
GSMUA_Achr8P13620_001	Banana	nucleus	24.49	42.56
KRH05923	Soybean	nucleus	41.38	37.3
KRH17404	Soybean	nucleus	41.14	37.2
KRH06026	Soybean	nucleus	29.37	37.14
KRH26266	Soybean	nucleus	29.25	36.99
KRH51289	Soybean	nucleus	29.61	36.94
KRH68924	Soybean	nucleus	27.82	35.35
KRH49135	Soybean	nucleus	27.71	35.09
KRH00001	Soybean	nucleus	27.71	35.09
KRH74145	Soybean	nucleus	46.02	35.05
KRH49070	Soybean	nucleus	46.02	34.86
KRH12587	Soybean	nucleus	46.49	34.85
KRH75716	Soybean	nucleus	28.66	34.83
KRH60117	Soybean	nucleus	45.42	34.76
KRH37536	Soybean	nucleus	46.37	34.67
KRH65922	Soybean	nucleus	28.42	34.59
KRH06451	Soybean	nucleus	29.13	34.22
KRH02575	Soybean	nucleus	46.14	34.15
KRH19355	Soybean	nucleus	45.9	34.13
KRH47893	Soybean	nucleus	29.01	34.08
KRH41404	Soybean	nucleus	44.47	33.6
KRH68102	Soybean	nucleus	23.54	33.56
KRG96367	Soybean	nucleus	26.99	33.53
KRH59742	Soybean	nucleus	32.46	31.82
KRH41062	Soybean	nucleus	32.1	31.73
KRG89021	Soybean	nucleus	29.37	31.19
KRH63855	Soybean	nucleus	31.15	31.08
KRH24914	Soybean	nucleus	29.01	30.81
KRH54110	Soybean	nucleus	30.68	30.61
KRH26391	Soybean	nucleus	28.89	30.41

Protein Annotations

EntrezGene:100814479	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EMBL:ACUP02010839
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_18G046800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	UniProt:I1MZK6	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
EnsemblPlants:KRG98044	ProteinID:KRG98044	ProteinID:KRG98044.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF2	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000233F592	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr18:+:4089351..4096885

Molecular Weight (calculated)

93253.1 Da

IEP (calculated)

6.356

GRAVY (calculated)

-0.441

Length

841 amino acids

Sequence
(BLAST)

001: MKLSTSGLGQ QGHEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVAATTNR EIDGHIPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL
101: QPLTPQEQKD TFLSMELGIP SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS LQPPAQELIA RDLHDAEWKF RHIFRGQPKR HLLTTGWSIF
201: VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFTVFYNP RASPSEFVIP LSKYIKAVYH TRISVGMRFR
301: MLFETEESSV RRYMGTITGI SDLDSVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPWHP GTSSLHDGRD EATNGLMWMR
401: GGPVDQGLNS LNFQGAGMLP WMQQRLDPTL LGNDQNQQYQ AMLAAGLQNL GSGYLMKQQM MNFQQPYHYL QQSGNSNSPL QLQQQQPIQQ SVSSNMLQPQ
501: AHVLTENLSQ HLLQKPHNNQ EVQAQQQQHT YQDSLLIPSD QLHQRQHSGI PSPSYSKPDF LDSSMKFPAS VSPGQNMLSS LCPEGSGSLL NLSRSSLSLL
601: TEQLPQQQWT QKYAPVQVNT YGGTVSHAQY SGKDSAMVLP HCNSDAQNST LFGVNIDSSG LLPITVPGYT TSSADTNSST MPLADSGFQG SLYGCMDSSE
701: LLQSAGHVDP ENQSQTFVKV YKSGSVGRSL DISRFSSYHE LREELAQMFG IEGKLEDPLR SGWQLVFVDR ENDVLLLGDD PWESFVNNVW YIKILSPEDI
801: QKMGEQAVES LALGSGQRLN GTGAESQDIV SGPPSIGSLE Y

Best Arabidopsis Sequence Match ( AT5G37020.1 )
(BLAST)

001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L

Arabidopsis Description

ARF8Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.