Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH31615 | Soybean | nucleus | 45.28 | 32.88 |
| CDX97478 | Canola | nucleus | 66.04 | 30.7 |
| HORVU5Hr1G081180.1 | Barley | cytosol, nucleus | 52.83 | 29.17 |
| TraesCS5D01G323500.1 | Wheat | cytosol | 52.83 | 21.05 |
| TraesCS5B01G317800.1 | Wheat | cytosol | 52.83 | 21.05 |
| TraesCS5A01G317200.1 | Wheat | cytosol | 52.83 | 21.05 |
| Zm00001d021279_P002 | Maize | plastid | 54.72 | 20.86 |
| Os09t0527700-01 | Rice | nucleus | 54.72 | 20.71 |
| EER97080 | Sorghum | plastid | 54.72 | 20.57 |
| CDY39982 | Canola | cytosol | 54.72 | 16.38 |
| CDX87307 | Canola | cytosol | 56.6 | 15.96 |
| Bra035185.1-P | Field mustard | cytosol | 56.6 | 15.96 |
| HORVU1Hr1G081910.1 | Barley | plastid | 37.74 | 15.04 |
| CDY14220 | Canola | nucleus | 30.19 | 12.9 |
| Bra010338.1-P | Field mustard | cytosol, nucleus, plastid | 28.3 | 12.61 |
| TraesCS2B01G591500.1 | Wheat | mitochondrion | 30.19 | 10.81 |
| TraesCS2A01G592700.1 | Wheat | cytosol | 30.19 | 10.13 |
| TraesCS2A01G592900.1 | Wheat | plastid | 32.08 | 9.55 |
| TraesCS2D01G561800.1 | Wheat | mitochondrion | 30.19 | 9.52 |
| AT1G80390.1 | Thale cress | cytosol | 3.77 | 1.55 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EMBL:ACUP02000887 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EnsemblPlantsGene:GLYMA_02G142400 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 |
| InterPro:IPR000270 | UniProt:K7K8B6 | EnsemblPlants:KRH71336 | ProteinID:KRH71336 | ProteinID:KRH71336.1 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 | UniParc:UPI0002963B85 |
Description
hypothetical protein
Coordinates
chr2:-:14688639..14689877
Molecular Weight (calculated)
6131.5 Da
IEP (calculated)
8.215
GRAVY (calculated)
-0.596
Length
53 amino acids
Sequence
(BLAST)
(BLAST)
1: MSPTYEDRDG DWMLVGDVPW EMFVESCKRL RIMKGKEAIG LAPRAVEKCK NRS
001: MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
Arabidopsis Description
IAA16Auxin-responsive protein IAA16 [Source:UniProtKB/Swiss-Prot;Acc:O24407]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.