CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90734
EER93778
EER97080
EER98076
EES02172
EES11567
EES13038
EES16315
EES17832
KXG19536
KXG22376
KXG33336
OQU84670
OQU86163

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80390.1	KXG19536	AT1G19220.1	21734647
AT1G80390.1	EES13038	AT1G19850.1	21734647
AT1G80390.1	EES02172	AT1G35240.1	21734647
AT1G80390.1	EES17832	AT1G51950.1	21734647
AT1G80390.1	KXG22376	AT1G51950.1	21734647
AT1G80390.1	KXG33336	AT1G51950.1	21734647
AT1G80390.1	OQU84670	AT1G51950.1	21734647
AT1G80390.1	OQU86163	AT1G51950.1	21734647
AT1G80390.1	EER97080	AT1G80390.1	21734647
AT1G80390.1	EER90734	AT4G14560.1	21734647
AT1G80390.1	EER93778	AT4G14560.1	21734647
AT1G80390.1	EER98076	AT4G14560.1	21734647
AT1G80390.1	EES16315	AT4G14560.1	21734647
AT1G80390.1	KXG19536	AT5G20730.1	21734647
AT1G80390.1	EER90734	AT5G43700.1	21734647
AT1G80390.1	EER93778	AT5G43700.1	21734647
AT1G80390.1	EER98076	AT5G43700.1	21734647
AT1G80390.1	EES16315	AT5G43700.1	21734647
AT1G80390.1	EES11567	AT5G57420.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021279_P002	Maize	plastid	94.33	95.68
HORVU5Hr1G081180.1	Barley	cytosol, nucleus	58.16	85.42
Os09t0527700-01	Rice	nucleus	82.27	82.86
TraesCS5A01G317200.1	Wheat	cytosol	74.47	78.95
TraesCS5B01G317800.1	Wheat	cytosol	74.47	78.95
TraesCS5D01G323500.1	Wheat	cytosol	74.47	78.95
KRH71336	Soybean	nucleus	20.57	54.72
KRH31615	Soybean	nucleus	27.66	53.42
CDX97478	Canola	nucleus	31.91	39.47
Bra010338.1-P	Field mustard	cytosol, nucleus, plastid	30.5	36.13
CDY14220	Canola	nucleus	29.08	33.06
CDY39982	Canola	cytosol	38.3	30.51
Bra035185.1-P	Field mustard	cytosol	38.3	28.72
CDX87307	Canola	cytosol	38.3	28.72
AT1G80390.1	Thale cress	cytosol	21.28	23.26

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	EntrezGene:8062074	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	UniProt:C5X661
EnsemblPlants:EER97080	ProteinID:EER97080	ProteinID:EER97080.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:PB1_dom	PFAM:PF02309
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF36	EnsemblPlantsGene:SORBI_3002G273400	SUPFAM:SSF54277	UniParc:UPI0001A83979
RefSeq:XP_002460559.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:65650640..65652688

Molecular Weight (calculated)

15377.3 Da

IEP (calculated)

4.392

GRAVY (calculated)

-0.256

Length

141 amino acids

Sequence
(BLAST)

001: MAGYGGGDDG VDLTELTLGL PGVNARKARR ARKNGQQPPS SSAMMQAFVK VSMDGTPYLR KVDVAAYDDY GELVEALNEL FCCCSIGLMD GYGDWEHAVV
101: YEDGDGDWML VGDVPWEMFV SSCKRMRVMR SCEARGLSSN A

Best Arabidopsis Sequence Match ( AT5G43700.1 )
(BLAST)

001: MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL

Arabidopsis Description

IAA4Auxin-responsive protein IAA4 [Source:UniProtKB/Swiss-Prot;Acc:P33077]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.