CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88840
EER89802
EER94066
EES00605
EES02172
EES05458
EES13038
KXG22521
KXG26729
KXG33104
KXG36152
OQU77659

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57420.1	EES13038	AT1G19850.1	21734647
AT5G57420.1	EES02172	AT1G35240.1	21734647
AT5G57420.1	EER88840	AT2G28350.1	21734647
AT5G57420.1	EER94066	AT2G28350.1	21734647
AT5G57420.1	EES05458	AT2G28350.1	21734647
AT5G57420.1	KXG26729	AT2G28350.1	21734647
AT5G57420.1	KXG36152	AT2G28350.1	21734647
AT5G57420.1	EES00605	AT3G62100.1	21734647
AT5G57420.1	EER89802	AT4G29080.1	21734647
AT5G57420.1	KXG22521	AT4G29080.1	21734647
AT5G57420.1	KXG33104	AT4G29080.1	21734647
AT5G57420.1	OQU77659	AT4G29080.1	21734647
AT5G57420.1	EER88840	AT4G30080.1	21734647
AT5G57420.1	EER94066	AT4G30080.1	21734647
AT5G57420.1	EES05458	AT4G30080.1	21734647
AT5G57420.1	KXG26729	AT4G30080.1	21734647
AT5G57420.1	KXG36152	AT4G30080.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G112440.1	Barley	cytosol, nucleus	31.14	73.24
TraesCS2B01G534500.1	Wheat	nucleus, plastid	65.27	66.06
TraesCS2D01G506900.1	Wheat	nucleus, plastid	65.27	65.66
Zm00001d026480_P001	Maize	nucleus	65.27	64.5
TraesCS2A01G506100.1	Wheat	nucleus, plastid	64.07	64.07
Os04t0653300-00	Rice	nucleus	54.49	53.85
GSMUA_Achr10P...	Banana	nucleus	51.5	50.59
GSMUA_Achr7P16390_001	Banana	nucleus	52.1	49.71
GSMUA_Achr6P03870_001	Banana	cytosol	36.53	47.29
VIT_11s0052g00870.t01	Wine grape	nucleus	46.11	45.83
Bra002729.1-P	Field mustard	nucleus	43.11	45.0
AT5G57420.1	Thale cress	nucleus, plastid	43.11	42.11
KRH33583	Soybean	cytosol, nucleus	25.75	40.57
Solyc07g019450.2.1	Tomato	nucleus, plastid	35.33	40.14
CDY61501	Canola	nucleus, plastid	41.92	40.0
CDY47946	Canola	nucleus	41.92	40.0
PGSC0003DMT400093571	Potato	nucleus	25.15	36.21
CDY25909	Canola	nucleus, plastid	37.72	36.21
CDY38297	Canola	nucleus, plastid	38.32	35.56
KRG90334	Soybean	cytosol, plastid	24.55	29.29

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.2	EntrezGene:8068502	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	UniProt:C5Y9G5
EnsemblPlants:EES11567	ProteinID:EES11567	ProteinID:EES11567.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:PB1_dom	PFAM:PF02309
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF7	EnsemblPlantsGene:SORBI_3006G245300	UniParc:UPI0001A86E39	RefSeq:XP_002447239.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:58488906..58489673

Molecular Weight (calculated)

18021.4 Da

IEP (calculated)

9.700

GRAVY (calculated)

-0.568

Length

167 amino acids

Sequence
(BLAST)

001: MSGGGAASAS ASGSFEHHHA KRRPPTPGPP QQPPPQQRKL LTLSVQDNDG VAAGVVPPVT VVLDGRCICH RVHLHRHTGY RSLAGTLRRM FVDADDGQQR
101: RDGDDDLDLA NAVPGHVVAY EDLEDDLLLA GDLKWNDFVR VAKRIRIIPA KTKSSRAKKC GGGVNNK

Best Arabidopsis Sequence Match ( AT5G57420.1 )
(BLAST)

001: MNSFEPQSQD SLQRRFHQDN STTQQPRDTT TPFIPKPASK NHNNSNSSSG AAGRSFQGFG LNVEDDLVSS VVPPVTVVLE GRSICQRISL DKHGSYQSLA
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E

Arabidopsis Description

IAA33Auxin-responsive protein IAA33 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.