CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88840
EER94066
EES00605
EES02172
EES05458
EES09292
EES13038
EES17832
KXG22376
KXG26729
KXG33336
KXG36152
OQU84670
OQU86163

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	EES13038	AT1G19850.1	22096563
AT2G28350.1	EES02172	AT1G34310.1	22096563
AT2G28350.1	EER88840	AT2G28350.1	22096563
AT2G28350.1	EER94066	AT2G28350.1	22096563
AT2G28350.1	EES05458	AT2G28350.1	22096563
AT2G28350.1	KXG26729	AT2G28350.1	22096563
AT2G28350.1	KXG36152	AT2G28350.1	22096563
AT2G28350.1	EES17832	AT3G16500.1	21734647
AT2G28350.1	KXG22376	AT3G16500.1	21734647
AT2G28350.1	KXG33336	AT3G16500.1	21734647
AT2G28350.1	OQU84670	AT3G16500.1	21734647
AT2G28350.1	OQU86163	AT3G16500.1	21734647
AT2G28350.1	EES02172	AT3G61830.1	22096563
AT2G28350.1	EES17832	AT5G25890.1	22096563
AT2G28350.1	KXG22376	AT5G25890.1	22096563
AT2G28350.1	KXG33336	AT5G25890.1	22096563
AT2G28350.1	OQU84670	AT5G25890.1	22096563
AT2G28350.1	OQU86163	AT5G25890.1	22096563
AT4G30080.1	EES00605	AT3G17600.1	21798944
AT4G30080.1	EES09292	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032683_P001	Maize	nucleus	91.0	92.07
Zm00001d014013_P002	Maize	nucleus	85.2	91.15
TraesCS1A01G156600.1	Wheat	nucleus	83.74	83.87
TraesCS1D01G155100.1	Wheat	nucleus	83.45	83.58
TraesCS1B01G173700.1	Wheat	nucleus	83.6	83.36
HORVU1Hr1G041770.1	Barley	nucleus	83.02	83.14
Os10t0479900-01	Rice	nucleus	81.28	80.23
GSMUA_Achr4P18240_001	Banana	nucleus	61.1	69.36
GSMUA_Achr8P18930_001	Banana	nucleus	56.89	68.41
GSMUA_Achr5P18540_001	Banana	nucleus	51.09	67.82
GSMUA_Achr5P03960_001	Banana	nucleus	54.14	66.73
GSMUA_Achr11P...	Banana	nucleus	58.49	66.72
GSMUA_Achr5P14630_001	Banana	nucleus	53.12	66.42
GSMUA_Achr11P...	Banana	nucleus	51.96	66.17
VIT_06s0004g02750.t01	Wine grape	nucleus	65.31	63.29
VIT_13s0019g04380.t01	Wine grape	nucleus	61.39	62.3
PGSC0003DMT400055522	Potato	nucleus	61.83	61.56
Solyc09g007810.2.1	Tomato	nucleus	61.68	61.24
VIT_08s0040g01810.t01	Wine grape	nucleus	54.57	60.35
KRH25023	Soybean	nucleus	60.96	59.91
KRH29907	Soybean	nucleus	60.38	59.68
Solyc11g069500.1.1	Tomato	nucleus	60.38	59.51
PGSC0003DMT400020874	Potato	nucleus	60.23	59.37
KRH22880	Soybean	nucleus	57.33	58.96
KRH26435	Soybean	nucleus	59.8	58.86
CDX68620	Canola	nucleus	52.69	58.83
CDY43553	Canola	nucleus	51.96	58.59
KRH32480	Soybean	nucleus	59.51	58.57
EER88840	Sorghum	nucleus	60.23	58.53
Bra011162.1-P	Field mustard	nucleus	53.56	57.03
EES05458	Sorghum	nucleus	57.62	56.07
KRG95987	Soybean	nucleus	56.89	56.0
PGSC0003DMT400062489	Potato	nucleus	54.86	55.92
CDY15734	Canola	nucleus	55.15	55.88
Solyc06g075150.2.1	Tomato	nucleus	54.28	55.74
AT4G30080.1	Thale cress	nucleus	54.14	55.67
CDY04557	Canola	nucleus	54.72	55.04
KRG91907	Soybean	nucleus	46.73	54.3
AT2G28350.1	Thale cress	nucleus	54.43	54.11
KRH34867	Soybean	nucleus	48.04	54.09
Bra011955.1-P	Field mustard	nucleus	55.15	53.9
Bra024109.1-P	Field mustard	nucleus	49.64	49.28
Solyc10g086130.1.1	Tomato	nucleus	43.83	47.86
KXG36152	Sorghum	nucleus	45.72	47.51
KXG26729	Sorghum	nucleus, plastid	48.19	45.98
CDY46728	Canola	nucleus	53.41	43.6
CDY30172	Canola	nucleus	49.93	41.45
EES13156	Sorghum	nucleus	26.12	34.75
EES03412	Sorghum	nucleus	25.83	25.36
KXG22343	Sorghum	nucleus	24.82	25.3
EES18676	Sorghum	nucleus	26.56	24.76
KXG33384	Sorghum	nucleus	23.8	23.94

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:8067406	InterPro:Auxin_resp
InterPro:B3_DNA-bd	UniProt:C5WYD5	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlants:EER94066	ProteinID:EER94066	ProteinID:EER94066.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF36	SMART:SM01019	EnsemblPlantsGene:SORBI_3001G217300	SUPFAM:SSF101936	unigene:Sbi.2635	UniParc:UPI0001A828C5
RefSeq:XP_002467068.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:20193885..20198737

Molecular Weight (calculated)

75409.1 Da

IEP (calculated)

6.941

GRAVY (calculated)

-0.275

Length

689 amino acids

Sequence
(BLAST)

001: MKEAREEERC LDPQLWHACA GGMVQMPPVR SRVYYFPQGH AEHAHAGGAA DLAAGARPLP PLVLCAVTGV RFLADPETDE VFAKIRLVPL APGEVEFREP
101: DEFGLGVGGV GVDPADAREK LSSFAKTLTQ SDANNGGGFS VPRYCAETIF PKLDYRADPP VQTVLAKDVH GEVWKFRHIY RGTPRRHLLT TGWSTFVNQK
201: KLVAGDSIVF LRTEHGELCV GIRRAKRVSC GGMECMSGWN APGYGALSAF LKDEEGKMIK GPGGYMRGRG KVKITDVVEA ASLAASGQPF EVVYYPRAST
301: PEFVVKAASV QNAMRNQWCP GMRFKMAFET EDSSRISWFM GTIASAQVAD PIRWPNSPWR LLQVTWDEPD LLQNVKCVNP WLVEIVSSIP PIHLGPFSPP
401: RKKLRMPQHP DFPFDGQLLN PIFHGNPLGP SNSALRCFSD IAPAGIQGAR HAQFGLPLTD HQLSKLHLGL FQGGGFNRFD AITPPSHISK GFVISSAPVN
501: ESVSCLLTIG TPQATEKSDD RKKPHIMLFG KPILTEQQMN SRGSRETFSP EVTGNSSSDG NVQKTGNVSD GSGSSICIGF SSQGHEASEL GLEAGHCKVF
601: MESEDVGRTI DLSVFGSYEE LYGQLADMFG IEKAEIMSHL CYRDAAGAVK HTGEEPFSDF MKVARRLTII ESTEGRLQKP LIEYMMERA

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.