Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G30080.1 | KRG99964 | AT5G38420.1 | 21798944 |
| AT4G30080.1 | KRG99965 | AT5G38420.1 | 21798944 |
| AT4G30080.1 | KRH01757 | AT5G38420.1 | 21798944 |
| AT4G30080.1 | KRH15458 | AT5G38420.1 | 21798944 |
| AT4G30080.1 | KRH46925 | AT5G38420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34867 | Soybean | nucleus | 94.1 | 91.18 |
| HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 11.64 | 61.61 |
| KRH19870 | Soybean | nucleus | 52.78 | 60.89 |
| HORVU3Hr1G081710.1 | Barley | cytosol | 10.12 | 57.14 |
| HORVU5Hr1G024100.1 | Barley | cytosol | 14.5 | 56.95 |
| Os04t0519700-01 | Rice | nucleus | 35.08 | 53.06 |
| VIT_13s0019g04380.t01 | Wine grape | nucleus | 60.03 | 52.43 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 53.46 | 52.22 |
| GSMUA_Achr11P... | Banana | nucleus | 52.95 | 51.99 |
| GSMUA_Achr11P... | Banana | nucleus | 46.71 | 51.2 |
| CDY43553 | Canola | nucleus | 52.61 | 51.06 |
| CDX68620 | Canola | nucleus | 52.45 | 50.41 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 44.01 | 50.29 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 47.22 | 50.09 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 48.06 | 49.74 |
| Bra011162.1-P | Field mustard | nucleus | 53.63 | 49.15 |
| AT4G30080.1 | Thale cress | nucleus | 54.97 | 48.66 |
| KRH32480 | Soybean | nucleus | 57.17 | 48.43 |
| KRH22880 | Soybean | nucleus | 53.79 | 47.61 |
| KRG95987 | Soybean | nucleus | 55.99 | 47.43 |
| Zm00001d014013_P002 | Maize | nucleus | 51.43 | 47.36 |
| Os06t0685700-01 | Rice | nucleus | 55.82 | 47.29 |
| EER88840 | Sorghum | nucleus | 56.32 | 47.11 |
| TraesCS7D01G436800.1 | Wheat | nucleus | 54.97 | 46.91 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 43.51 | 46.82 |
| KRH25023 | Soybean | nucleus | 55.31 | 46.79 |
| EER94066 | Sorghum | nucleus | 54.3 | 46.73 |
| TraesCS7B01G346700.1 | Wheat | nucleus | 54.64 | 46.69 |
| HORVU1Hr1G041770.1 | Barley | nucleus | 53.96 | 46.51 |
| HORVU7Hr1G101270.1 | Barley | nucleus | 54.64 | 46.48 |
| TraesCS1D01G155100.1 | Wheat | nucleus | 53.79 | 46.37 |
| TraesCS1A01G156600.1 | Wheat | nucleus | 53.79 | 46.37 |
| KRH26435 | Soybean | nucleus | 54.64 | 46.29 |
| Os10t0479900-01 | Rice | nucleus | 54.47 | 46.28 |
| TraesCS7A01G446900.1 | Wheat | nucleus | 54.64 | 46.22 |
| TraesCS1B01G173700.1 | Wheat | nucleus | 53.79 | 46.16 |
| Zm00001d032683_P001 | Maize | nucleus | 52.95 | 46.11 |
| KRH29907 | Soybean | nucleus | 53.96 | 45.91 |
| Os02t0628600-01 | Rice | nucleus | 52.61 | 45.81 |
| Zm00001d014507_P002 | Maize | nucleus | 55.65 | 45.52 |
| KRH16622 | Soybean | mitochondrion | 10.12 | 45.45 |
| Zm00001d000358_P001 | Maize | nucleus | 53.63 | 45.43 |
| TraesCS6A01G222300.1 | Wheat | nucleus | 49.92 | 44.05 |
| Bra024109.1-P | Field mustard | nucleus | 50.59 | 43.23 |
| EES05458 | Sorghum | nucleus | 51.43 | 43.08 |
| Zm00001d017284_P001 | Maize | nucleus | 50.59 | 42.43 |
| Zm00001d051172_P001 | Maize | nucleus | 50.42 | 42.05 |
| TraesCS2B01G397300.1 | Wheat | nucleus | 49.07 | 41.1 |
| TraesCS2D01G376600.1 | Wheat | nucleus | 49.24 | 40.9 |
| TraesCS6B01G258800.1 | Wheat | mitochondrion | 50.42 | 40.03 |
| HORVU2Hr1G089670.1 | Barley | nucleus | 47.05 | 39.3 |
| KRH25669 | Soybean | cytosol | 7.42 | 39.29 |
| HORVU6Hr1G058890.2 | Barley | mitochondrion | 50.25 | 39.26 |
| TraesCS6D01G212700.1 | Wheat | plastid | 50.76 | 39.14 |
| Zm00001d025871_P001 | Maize | nucleus | 38.62 | 38.95 |
| CDY46728 | Canola | nucleus | 54.64 | 38.39 |
| KXG36152 | Sorghum | nucleus | 42.33 | 37.86 |
| KRH10952 | Soybean | nucleus | 18.55 | 37.8 |
| KXG26729 | Sorghum | nucleus, plastid | 45.87 | 37.67 |
| KRH18828 | Soybean | nucleus | 34.57 | 37.21 |
| CDY30172 | Canola | nucleus | 50.76 | 36.27 |
| HORVU7Hr1G021880.1 | Barley | nucleus | 13.49 | 36.2 |
| KRH16623 | Soybean | nucleus | 22.43 | 34.46 |
| KRH64757 | Soybean | plastid | 32.55 | 34.34 |
| TraesCS2A01G380300.1 | Wheat | nucleus | 19.06 | 27.97 |
| HORVU2Hr1G089660.8 | Barley | nucleus | 15.01 | 27.38 |
| KRH50128 | Soybean | nucleus | 28.84 | 24.12 |
| KRH20373 | Soybean | nucleus | 28.84 | 23.95 |
| KRH21341 | Soybean | nucleus | 28.67 | 23.1 |
| KRH10951 | Soybean | cytosol, nucleus | 9.78 | 13.55 |
| KRH19868 | Soybean | nucleus | 0.67 | 4.49 |
Protein Annotations
| EntrezGene:100818234 | MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | EMBL:ACUP02012713 | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | EnsemblPlantsGene:GLYMA_20G180000 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009987 | UniProt:I1NHG1 |
| InterPro:IPR003340 | InterPro:IPR015300 | EnsemblPlants:KRG91907 | ProteinID:KRG91907 | ProteinID:KRG91907.1 | PFAM:PF02362 |
| PFAM:PF06507 | PFscan:PS50863 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF39 | SMART:SM01019 | SUPFAM:SSF101936 |
| UniParc:UPI00023DCD2C | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr20:-:41776704..41779931
Molecular Weight (calculated)
65250.5 Da
IEP (calculated)
7.129
GRAVY (calculated)
-0.336
Length
593 amino acids
Sequence
(BLAST)
(BLAST)
001: MFMVMDSAER CLDSQLWHAC AGAMVQMPPL NTKVFYFPQG HAEHAHGKRV DFPKNQTRVP PLIPCRLSAM KYMADPDTDE VYVKMRLTPL REHELLDSQD
101: DCFLGNSAGG GGVDQGQEKP PTSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTIIAKDML GQCWKFRHIY RGTPRRHLLT TGWSNFVNQK
201: RLVAGDSIVF LRAENGDLCV GIRRAKKGIG GGTEFSSGGW NNPLFGGGFL CGSESNLMSG GDHEMLVGRV AAESVVEAVT CAVNGRPFEV VYYPRASSPE
301: FCVKASVVKA AMQIQWCSGM RFKMPFETED SSRISWFMGT ISSVQVADPI LWPDSPWRLL QVVWDEPDLL QNVKCVNPWL VELVSNMPTF NLSAYSPPRK
401: KQRFLQDPYF QVINQLPMPS FSSNLLNYTN SICTIEDNNS SGGIQGARHP QFGLSPSDFP FNKLPADMLL GGFSRLDHAA AQPIMPHCGT FKNNTTTKAN
501: VDISCLLTVG NPGQNFKESN ETKAPHILLF GKLIHTEQKS SNTTSSASTN GNSVSEGNSL KTSNASDGGS PWYKEQHKSD LGNDNVNTLC IAL
101: DCFLGNSAGG GGVDQGQEKP PTSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTIIAKDML GQCWKFRHIY RGTPRRHLLT TGWSNFVNQK
201: RLVAGDSIVF LRAENGDLCV GIRRAKKGIG GGTEFSSGGW NNPLFGGGFL CGSESNLMSG GDHEMLVGRV AAESVVEAVT CAVNGRPFEV VYYPRASSPE
301: FCVKASVVKA AMQIQWCSGM RFKMPFETED SSRISWFMGT ISSVQVADPI LWPDSPWRLL QVVWDEPDLL QNVKCVNPWL VELVSNMPTF NLSAYSPPRK
401: KQRFLQDPYF QVINQLPMPS FSSNLLNYTN SICTIEDNNS SGGIQGARHP QFGLSPSDFP FNKLPADMLL GGFSRLDHAA AQPIMPHCGT FKNNTTTKAN
501: VDISCLLTVG NPGQNFKESN ETKAPHILLF GKLIHTEQKS SNTTSSASTN GNSVSEGNSL KTSNASDGGS PWYKEQHKSD LGNDNVNTLC IAL
001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
Arabidopsis Description
ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.