Factsheet for GSMUA_Achr5P18540_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20000_001
GSMUA_Achr1P20010_001
GSMUA_Achr1P20040_001
GSMUA_Achr2P19760_001
GSMUA_Achr2P22730_001
GSMUA_Achr3P16300_001
GSMUA_Achr4P18240_001
GSMUA_Achr5P03960_001
GSMUA_Achr5P09310_001
GSMUA_Achr5P14630_001
GSMUA_Achr5P18540_001
GSMUA_Achr6P09710_001
GSMUA_Achr6P36980_001
GSMUA_Achr7P13680_001
GSMUA_Achr7P24330_001
GSMUA_Achr8P18400_001
GSMUA_Achr8P18930_001
GSMUA_Achr8P29850_001
GSMUA_Achr9P16800_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	GSMUA_Achr1P20000_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr1P20010_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr1P20040_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr6P36980_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr10P...	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr2P19760_001	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr7P24330_001	AT1G34310.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr11P...	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr11P...	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr4P18240_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P03960_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P14630_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P18540_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr8P18930_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr3P16300_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr5P09310_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr7P13680_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_AchrUn_...	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr10P...	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr2P19760_001	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr7P24330_001	AT3G61830.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr3P16300_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_Achr5P09310_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_Achr7P13680_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT5G25890.1	22096563
AT4G30080.1	GSMUA_Achr8P29850_001	AT3G17600.1	21798944
AT4G30080.1	GSMUA_Achr9P16800_001	AT3G17600.1	21798944
AT4G30080.1	GSMUA_Achr10P...	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr2P22730_001	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr6P09710_001	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr8P18400_001	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P18930_001	Banana	nucleus	73.03	66.14
GSMUA_Achr5P14630_001	Banana	nucleus	69.17	65.15
GSMUA_Achr11P...	Banana	nucleus	66.28	63.59
GSMUA_Achr5P03960_001	Banana	nucleus	67.82	62.97
GSMUA_Achr4P18240_001	Banana	nucleus	72.25	61.78
GSMUA_Achr11P...	Banana	nucleus	71.1	61.09
Zm00001d014013_P002	Maize	nucleus	64.16	51.71
VIT_06s0004g02750.t01	Wine grape	nucleus	70.13	51.2
VIT_13s0019g04380.t01	Wine grape	nucleus	66.86	51.1
EER94066	Sorghum	nucleus	67.82	51.09
Zm00001d032683_P001	Maize	nucleus	66.67	50.81
Os06t0685700-01	Rice	nucleus	68.4	50.71
TraesCS1A01G156600.1	Wheat	nucleus	66.86	50.44
TraesCS1B01G173700.1	Wheat	nucleus	67.05	50.36
TraesCS1D01G155100.1	Wheat	nucleus	66.67	50.29
TraesCS7D01G436800.1	Wheat	nucleus	67.24	50.22
TraesCS7B01G346700.1	Wheat	nucleus	66.86	50.0
HORVU1Hr1G041770.1	Barley	nucleus	66.09	49.85
HORVU7Hr1G101270.1	Barley	nucleus	66.67	49.64
VIT_08s0040g01810.t01	Wine grape	nucleus	59.54	49.6
TraesCS7A01G446900.1	Wheat	nucleus	66.86	49.5
KRH22880	Soybean	nucleus	63.78	49.4
EER88840	Sorghum	nucleus	67.24	49.22
Os10t0479900-01	Rice	nucleus	66.09	49.14
KRH26435	Soybean	nucleus	66.09	49.0
PGSC0003DMT400055522	Potato	nucleus	64.93	48.7
Solyc09g007810.2.1	Tomato	nucleus	64.93	48.56
CDY43553	Canola	nucleus	56.84	48.28
Zm00001d014507_P002	Maize	nucleus	67.24	48.14
KRH25023	Soybean	nucleus	64.93	48.07
CDX68620	Canola	nucleus	56.84	47.81
Solyc11g069500.1.1	Tomato	nucleus	63.97	47.5
KRH29907	Soybean	nucleus	63.78	47.49
Zm00001d000358_P001	Maize	nucleus	63.39	47.0
KRG95987	Soybean	nucleus	63.01	46.71
KRH32480	Soybean	nucleus	63.01	46.71
Os02t0628600-01	Rice	nucleus	61.27	46.7
PGSC0003DMT400020874	Potato	nucleus	62.81	46.64
AT4G30080.1	Thale cress	nucleus	59.73	46.27
Bra011162.1-P	Field mustard	nucleus	57.61	46.21
EES05458	Sorghum	nucleus	61.08	44.77
Solyc06g075150.2.1	Tomato	nucleus	57.8	44.71
CDY04557	Canola	nucleus	58.77	44.53
Zm00001d017284_P001	Maize	nucleus	60.5	44.41
PGSC0003DMT400062489	Potato	nucleus	57.8	44.38
CDY15734	Canola	nucleus	58.0	44.26
KRG91907	Soybean	nucleus	50.29	44.01
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	9.44	43.75
AT2G28350.1	Thale cress	nucleus	58.19	43.58
KRH34867	Soybean	nucleus	51.25	43.46
Bra011955.1-P	Field mustard	nucleus	58.96	43.4
TraesCS6A01G222300.1	Wheat	nucleus	55.68	43.01
Os04t0519700-01	Rice	nucleus	31.98	42.35
Zm00001d051172_P001	Maize	nucleus	57.61	42.05
TraesCS2A01G380300.1	Wheat	nucleus	32.56	41.83
TraesCS2B01G397300.1	Wheat	nucleus	56.84	41.67
TraesCS2D01G376600.1	Wheat	nucleus	56.65	41.18
TraesCS6B01G258800.1	Wheat	mitochondrion	58.57	40.7
Bra024109.1-P	Field mustard	nucleus	53.76	40.2
HORVU6Hr1G058890.2	Barley	mitochondrion	58.38	39.92
HORVU2Hr1G089670.1	Barley	nucleus	54.14	39.58
TraesCS6D01G212700.1	Wheat	plastid	58.19	39.27
Solyc10g086130.1.1	Tomato	nucleus	47.4	38.99
HORVU5Hr1G024100.1	Barley	cytosol	10.98	37.75
KXG36152	Sorghum	nucleus	48.17	37.71
KXG26729	Sorghum	nucleus, plastid	50.87	36.57
CDY46728	Canola	nucleus	57.8	35.55
Zm00001d025871_P001	Maize	nucleus	39.69	35.03
GSMUA_Achr9P29480_001	Banana	nucleus	30.06	34.82
CDY30172	Canola	nucleus	53.76	33.61
GSMUA_Achr6P18900_001	Banana	plastid	25.63	32.36
HORVU3Hr1G081710.1	Barley	cytosol	5.97	29.52
GSMUA_Achr10P...	Banana	nucleus	26.2	27.2
HORVU2Hr1G089660.8	Barley	nucleus	15.41	24.62
HORVU7Hr1G021880.1	Barley	nucleus	9.44	22.17
GSMUA_Achr10P...	Banana	nucleus	24.28	21.91
GSMUA_Achr7P11000_001	Banana	nucleus	22.35	19.4
GSMUA_Achr4P10590_001	Banana	nucleus	25.63	18.63
GSMUA_Achr4P02750_001	Banana	nucleus	24.86	17.97
GSMUA_Achr7P25330_001	Banana	nucleus	24.28	17.33
GSMUA_Achr3P31350_001	Banana	nucleus	23.12	15.13

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G18540_001	EnsemblPlants:GSMUA_Achr5P18540_001
EnsemblPlants:GSMUA_Achr5T18540_001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0SZN3	InterPro:PB1_dom
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF39
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002965F43	:	:	:

Description

Auxin response factor 18 [Source:GMGC_GENE;Acc:GSMUA_Achr5G18540_001]

Coordinates

chr5:-:20013194..20017406

Molecular Weight (calculated)

57834.1 Da

IEP (calculated)

7.675

GRAVY (calculated)

-0.311

Length

519 amino acids

Sequence
(BLAST)

001: MKDTDKCLDS QLWHACAGGM VRMPAMNSRV YYFPQGHAEH SQGFMADLET DEVFAKIRMA PIRNPPVQNV IAKDVHGKVW KFRHIYRGTP RRHLLTTGWS
101: NFVNQKKLVA GDSIVFLRAE NGDLCVGIRR AKRGNDSHSV FSRGIRGRGQ VRSDSVVEAA THAANGQPFE VVYYPRASTP EFCVKAAAVK AALRIQWYPG
201: MRFKMAFETE DSSRISWFMG TISSVQVADP IRWPNSPWRL LQVTWDEPDL LQNVKRVNPW LVELASNMPA INLGHLPPPI KKQRVLQQPP FEGQFPVPMV
301: SGTPSVPRGS PYCCFSDSAP AGIQGARHAQ FDISLSDLHL NKLQTGLFHA GFHRLDHATP PSRISTGVIV GNPTIHDKPI LTEQQISLCK SETMIFDDVT
401: GTSSSDGNLE KATNVSDALE LIIEAEHCKV FMESEDVGHS LDLSVFGSYE ELYERLGDMF GIEKSEMITH MFYKDAAGAL KHAGDEPFSN FMKTARRLTI
501: LTDSGNATQQ GRESLLPIV

Best Arabidopsis Sequence Match ( AT1G77850.1 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.