CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89021
KRH00001
KRH05923
KRH06451
KRH09948
KRH17404
KRH22880
KRH22924
KRH23388
KRH24914
KRH25023
KRH26391
KRH26435
KRH29907
KRH44271
KRH47203
KRH47893
KRH49135
KRH65922
KRH68924
KRH75716

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	KRH05923	AT1G19850.1	22096563
AT2G28350.1	KRH17404	AT1G19850.1	22096563
AT2G28350.1	KRH00001	AT1G34310.1	22096563
AT2G28350.1	KRH49135	AT1G34310.1	22096563
AT2G28350.1	KRH65922	AT1G34310.1	22096563
AT2G28350.1	KRH75716	AT1G34310.1	22096563
AT2G28350.1	KRH22880	AT2G28350.1	22096563
AT2G28350.1	KRH25023	AT2G28350.1	22096563
AT2G28350.1	KRH26435	AT2G28350.1	22096563
AT2G28350.1	KRH29907	AT2G28350.1	22096563
AT2G28350.1	KRH09948	AT3G16500.1	21734647
AT2G28350.1	KRH23388	AT3G16500.1	21734647
AT2G28350.1	KRH44271	AT3G16500.1	21734647
AT2G28350.1	KRH47203	AT3G16500.1	21734647
AT2G28350.1	KRH06451	AT3G61830.1	22096563
AT2G28350.1	KRH47893	AT3G61830.1	22096563
AT2G28350.1	KRH68924	AT3G61830.1	22096563
AT2G28350.1	KRG89021	AT5G60450.1	22096563
AT2G28350.1	KRH22924	AT5G60450.1	22096563
AT2G28350.1	KRH24914	AT5G60450.1	22096563
AT2G28350.1	KRH26391	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22880	Soybean	nucleus	89.14	93.13
KRH25023	Soybean	nucleus	75.14	75.04
KRH29907	Soybean	nucleus	74.14	74.46
VIT_06s0004g02750.t01	Wine grape	nucleus	72.0	70.89
GSMUA_Achr4P18240_001	Banana	nucleus	57.86	66.72
GSMUA_Achr5P18540_001	Banana	nucleus	49.0	66.09
Solyc11g069500.1.1	Tomato	nucleus	65.71	65.81
GSMUA_Achr8P18930_001	Banana	nucleus	53.71	65.62
GSMUA_Achr11P...	Banana	nucleus	50.71	65.62
PGSC0003DMT400020874	Potato	nucleus	65.14	65.24
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	10.43	65.18
GSMUA_Achr5P03960_001	Banana	nucleus	51.71	64.76
GSMUA_Achr5P14630_001	Banana	nucleus	50.71	64.43
GSMUA_Achr11P...	Banana	nucleus	55.57	64.4
KRH19868	Soybean	nucleus	8.14	64.04
KRH19870	Soybean	nucleus	46.14	62.84
Zm00001d014013_P002	Maize	nucleus	56.29	61.18
Os06t0685700-01	Rice	nucleus	60.71	60.71
CDY15734	Canola	nucleus	58.86	60.59
CDY04557	Canola	nucleus	59.0	60.29
TraesCS1A01G156600.1	Wheat	nucleus	59.14	60.17
TraesCS7B01G346700.1	Wheat	nucleus	59.57	60.09
TraesCS1D01G155100.1	Wheat	nucleus	59.0	60.03
HORVU3Hr1G081710.1	Barley	cytosol	9.0	60.0
AT2G28350.1	Thale cress	nucleus	59.29	59.88
TraesCS7D01G436800.1	Wheat	nucleus	59.43	59.86
EER88840	Sorghum	nucleus	60.57	59.8
EER94066	Sorghum	nucleus	58.86	59.8
TraesCS1B01G173700.1	Wheat	nucleus	59.0	59.77
HORVU5Hr1G024100.1	Barley	cytosol	12.86	59.6
Bra011955.1-P	Field mustard	nucleus	60.0	59.57
HORVU7Hr1G101270.1	Barley	nucleus	59.29	59.54
HORVU1Hr1G041770.1	Barley	nucleus	58.43	59.45
PGSC0003DMT400062489	Potato	nucleus	57.29	59.32
Zm00001d032683_P001	Maize	nucleus	57.57	59.18
KRH32480	Soybean	nucleus	59.0	59.0
TraesCS7A01G446900.1	Wheat	nucleus	58.86	58.77
Solyc06g075150.2.1	Tomato	nucleus	56.14	58.57
KRG95987	Soybean	nucleus	58.0	58.0
Zm00001d000358_P001	Maize	nucleus	57.29	57.29
Zm00001d014507_P002	Maize	nucleus	59.14	57.1
Os10t0479900-01	Rice	nucleus	56.43	56.59
Os02t0628600-01	Rice	nucleus	53.71	55.21
Os04t0519700-01	Rice	nucleus	30.86	55.1
KRG91907	Soybean	nucleus	46.29	54.64
KRH34867	Soybean	nucleus	47.57	54.41
EES05458	Sorghum	nucleus	54.57	53.95
Zm00001d017284_P001	Maize	nucleus	53.86	53.32
TraesCS6A01G222300.1	Wheat	nucleus	50.29	52.38
Zm00001d051172_P001	Maize	nucleus	52.29	51.48
TraesCS2D01G376600.1	Wheat	nucleus	50.71	49.72
TraesCS2B01G397300.1	Wheat	nucleus	50.0	49.44
TraesCS6B01G258800.1	Wheat	mitochondrion	52.0	48.73
HORVU2Hr1G089670.1	Barley	nucleus	48.86	48.17
HORVU6Hr1G058890.2	Barley	mitochondrion	51.57	47.56
TraesCS6D01G212700.1	Wheat	plastid	51.86	47.2
KXG36152	Sorghum	nucleus	42.29	44.65
KXG26729	Sorghum	nucleus, plastid	45.0	43.63
KRH16622	Soybean	mitochondrion	8.14	43.18
TraesCS2A01G380300.1	Wheat	nucleus	24.86	43.07
Zm00001d025871_P001	Maize	nucleus	34.43	40.99
KRH25669	Soybean	cytosol	6.43	40.18
KRH10952	Soybean	nucleus	16.57	39.86
KRH64757	Soybean	plastid	31.14	38.79
KRH18828	Soybean	nucleus	30.43	38.66
HORVU7Hr1G021880.1	Barley	nucleus	12.0	38.01
KRH16623	Soybean	nucleus	19.71	35.75
HORVU2Hr1G089660.8	Barley	nucleus	12.14	26.15
KRH50128	Soybean	nucleus	26.14	25.81
KRH21341	Soybean	nucleus	26.86	25.54
KRH20373	Soybean	nucleus	25.86	25.35
KRH10951	Soybean	cytosol, nucleus	10.29	16.82

Protein Annotations

EntrezGene:100778135	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EMBL:ACUP02007714
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_12G174100	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	UniProt:I1LTK0	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KRH26435
ProteinID:KRH26435	ProteinID:KRH26435.1	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF27	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000233D472
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:33132698..33136308

Molecular Weight (calculated)

76829.1 Da

IEP (calculated)

7.728

GRAVY (calculated)

-0.361

Length

700 amino acids

Sequence
(BLAST)

001: MKETDKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQSNVDFGAA RIPIPPLILC CVAAVKFLAD PETDEVFARL RMVPLRNSEL DYEDSDGNGA
101: EGSEKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY SAEPPVQTVI AKDVHGEVWK FRHIYRGTPR RHLLTTGWSS FVNQKKLVAG DSIVFLRAEN
201: GDLCVGIRRA KRGGVGGAEG PCGWSSSGGG LGPGPGLGLG PGPGPYGAFS GFLREESKVV RSGRPKVSGE SVREAVTLAA SNQPFEVVYY PRANTPEFCI
301: RTSAVRGAMR IQWSSGMRFK MPFETEDSSR ISWFMGTIAS VQLLDPIRWP NSPWRLLQVT WDEPDLLHNV KRVSPWLVEL VSNVPIIHLA PFSPPRKKLR
401: FPQHPEFPLD FQFPIPSFSG NPFGSSTSSP LCCLSDNAPA GIQGARHAQI GISLSDLHLN NKLQLGLLPT NVHQLNLHTG ICNGNITNHG KSKESLSCLL
501: TMGNSNKSLE KSDHVKRHQF LLFGQPILTE QQISRSSSDV LSQNFTVTDD ENKEKKEKGF LSDSQSSVSP GKSSSTTEFS WQVGSDTSHC KVFIESEDVG
601: RTLDLSCLGS YEELYMRLAN MFGIERSEML SHVLYRDAAG ALKQTGEEPF SEFMKTAKRL TILTDSNNKD SRRVWITGIR NAEHGLDTAS NKTGPLGIFA

Best Arabidopsis Sequence Match ( AT2G28350.1 )
(BLAST)

001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA

Arabidopsis Description

ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.