Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G258800.1 | Wheat | mitochondrion | 94.94 | 85.41 |
| TraesCS6D01G212700.1 | Wheat | plastid | 96.28 | 84.14 |
| HORVU6Hr1G058890.2 | Barley | mitochondrion | 91.82 | 81.29 |
| Os02t0628600-01 | Rice | nucleus | 78.72 | 77.68 |
| EES05458 | Sorghum | nucleus | 77.23 | 73.31 |
| Zm00001d017284_P001 | Maize | nucleus | 76.34 | 72.56 |
| Zm00001d051172_P001 | Maize | nucleus | 74.7 | 70.6 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 54.17 | 59.97 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 50.3 | 58.99 |
| GSMUA_Achr11P... | Banana | nucleus | 51.19 | 56.95 |
| GSMUA_Achr11P... | Banana | nucleus | 45.68 | 56.75 |
| TraesCS7A01G446900.1 | Wheat | nucleus | 58.48 | 56.06 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 43.01 | 55.68 |
| TraesCS2A01G380300.1 | Wheat | nucleus | 33.33 | 55.45 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 45.54 | 54.74 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 44.49 | 54.27 |
| VIT_08s0040g01810.t01 | Wine grape | nucleus | 49.7 | 53.61 |
| VIT_13s0019g04380.t01 | Wine grape | nucleus | 53.72 | 53.17 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 56.1 | 53.02 |
| CDY43553 | Canola | nucleus | 48.07 | 52.86 |
| TraesCS1A01G156600.1 | Wheat | nucleus | 54.02 | 52.76 |
| CDX68620 | Canola | nucleus | 48.36 | 52.67 |
| Solyc09g007810.2.1 | Tomato | nucleus | 53.87 | 52.16 |
| PGSC0003DMT400055522 | Potato | nucleus | 53.42 | 51.88 |
| KRH32480 | Soybean | nucleus | 53.87 | 51.71 |
| KRH22880 | Soybean | nucleus | 51.49 | 51.64 |
| Solyc11g069500.1.1 | Tomato | nucleus | 53.42 | 51.36 |
| Bra011162.1-P | Field mustard | nucleus | 48.96 | 50.85 |
| PGSC0003DMT400020874 | Potato | nucleus | 52.83 | 50.79 |
| KRH26435 | Soybean | nucleus | 52.38 | 50.29 |
| KRH34867 | Soybean | nucleus | 45.68 | 50.16 |
| AT4G30080.1 | Thale cress | nucleus | 49.85 | 50.0 |
| KRG91907 | Soybean | nucleus | 44.05 | 49.92 |
| KRG95987 | Soybean | nucleus | 51.64 | 49.57 |
| KRH25023 | Soybean | nucleus | 51.34 | 49.22 |
| CDY15734 | Canola | nucleus | 49.7 | 49.12 |
| KRH29907 | Soybean | nucleus | 50.89 | 49.07 |
| CDY04557 | Canola | nucleus | 49.55 | 48.61 |
| AT2G28350.1 | Thale cress | nucleus | 49.85 | 48.34 |
| Solyc06g075150.2.1 | Tomato | nucleus | 47.92 | 47.99 |
| Bra011955.1-P | Field mustard | nucleus | 50.0 | 47.66 |
| PGSC0003DMT400062489 | Potato | nucleus | 47.77 | 47.49 |
| Bra024109.1-P | Field mustard | nucleus | 46.28 | 44.81 |
| Solyc10g086130.1.1 | Tomato | nucleus | 40.18 | 42.79 |
| CDY46728 | Canola | nucleus | 48.81 | 38.86 |
| CDY30172 | Canola | nucleus | 46.43 | 37.59 |
| TraesCS2A01G567300.1 | Wheat | nucleus | 26.93 | 35.15 |
| TraesCS7A01G475700.1 | Wheat | nucleus | 14.73 | 26.68 |
| TraesCS3A01G246000.1 | Wheat | nucleus | 26.34 | 26.58 |
| TraesCS7A01G475600.1 | Wheat | nucleus | 14.73 | 26.47 |
| TraesCS3A01G292400.1 | Wheat | nucleus | 24.85 | 25.57 |
| TraesCS1A01G334900.1 | Wheat | nucleus | 26.79 | 25.46 |
| TraesCS1A01G396400.1 | Wheat | nucleus | 26.04 | 23.81 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | InterPro:Auxin_resp | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 |
| PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF37 | SMART:SM01019 |
| SUPFAM:SSF101936 | EnsemblPlantsGene:TraesCS6A01G222300 | EnsemblPlants:TraesCS6A01G222300.1 | TIGR:cd10017 | SEG:seg | : |
Description
No Description!
Coordinates
chr6A:-:415905558..415907673
Molecular Weight (calculated)
72911.0 Da
IEP (calculated)
7.723
GRAVY (calculated)
-0.351
Length
672 amino acids
Sequence
(BLAST)
(BLAST)
001: MITFADLTEP APGAERRVDR QLWLACAGGM CTVPPVGCNV YYFPQGHTEH ALGLDAGADL SAARVPALVP CRVAAVRYVA DTDTDEVFAR IRLAPLGATD
101: ADGDVQDDAA AVADEEQEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYAADPPV QTVIAKDVHG TAWKFRHIYR GTPRRHLLTT GWSAFVNQKK
201: LVAGDSIVFL RGDGGDLHVG IRRAKRGFCG AEEGSLSLTG WGRYSGPMRG NASPCTRGKV RAEDVVEAAR LAGSGQPFEV VYFPRASTPE FCVRAAAVRA
301: AMRVQWCPGM RFKMAFETQD SSRISWFMGT VAGVQVAHPT RWPQSPWRLL QVTWDEPDLL QNVKRVSPWL VEIVSSMPAM HLASFSPPRK KSRMPAYPEF
401: PFEGQLLNPS FLPNPMVHGH QHHYHQTDSY HPSFSPFPDC SAPSGIQGAR HSQFGPFLSD LHLTHLQSRL MYPGLRCHDH VSPATIPFPP RISTDLTIGS
501: SPARNGVSTT LPASAKRPND AKPPGLVLFG QTILTAQQMS RGDSAGVVNS PAAAGYSTRN WNTDKAGNAS QGSGSTVVQN SGSTDNTSSE RPRLFGDNSH
601: GSELGLKPGQ CKVFVESDTL GRNLDCSAMG SFEELYGRLS ETFCIEGAEL RSRVLYRGAD GEVKHAGDEP FR
101: ADGDVQDDAA AVADEEQEKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYAADPPV QTVIAKDVHG TAWKFRHIYR GTPRRHLLTT GWSAFVNQKK
201: LVAGDSIVFL RGDGGDLHVG IRRAKRGFCG AEEGSLSLTG WGRYSGPMRG NASPCTRGKV RAEDVVEAAR LAGSGQPFEV VYFPRASTPE FCVRAAAVRA
301: AMRVQWCPGM RFKMAFETQD SSRISWFMGT VAGVQVAHPT RWPQSPWRLL QVTWDEPDLL QNVKRVSPWL VEIVSSMPAM HLASFSPPRK KSRMPAYPEF
401: PFEGQLLNPS FLPNPMVHGH QHHYHQTDSY HPSFSPFPDC SAPSGIQGAR HSQFGPFLSD LHLTHLQSRL MYPGLRCHDH VSPATIPFPP RISTDLTIGS
501: SPARNGVSTT LPASAKRPND AKPPGLVLFG QTILTAQQMS RGDSAGVVNS PAAAGYSTRN WNTDKAGNAS QGSGSTVVQN SGSTDNTSSE RPRLFGDNSH
601: GSELGLKPGQ CKVFVESDTL GRNLDCSAMG SFEELYGRLS ETFCIEGAEL RSRVLYRGAD GEVKHAGDEP FR
001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
Arabidopsis Description
ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.