Factsheet for Solyc10g086130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	10.3	58.04
HORVU5Hr1G024100.1	Barley	cytosol	13.15	54.97
Solyc09g007810.2.1	Tomato	nucleus	59.27	53.89
HORVU3Hr1G081710.1	Barley	cytosol	8.56	51.43
GSMUA_Achr4P18240_001	Banana	nucleus	47.7	49.59
VIT_08s0040g01810.t01	Wine grape	nucleus	48.34	48.96
GSMUA_Achr11P...	Banana	nucleus	41.68	48.61
GSMUA_Achr5P03960_001	Banana	nucleus	42.95	48.48
KRH32480	Soybean	nucleus	53.41	48.14
GSMUA_Achr8P18930_001	Banana	nucleus	43.42	47.82
GSMUA_Achr11P...	Banana	nucleus	45.64	47.68
Os04t0519700-01	Rice	nucleus	29.48	47.45
GSMUA_Achr5P18540_001	Banana	nucleus	38.99	47.4
GSMUA_Achr5P14630_001	Banana	nucleus	41.2	47.19
KRG95987	Soybean	nucleus	50.4	45.43
Solyc11g013480.1.1	Tomato	nucleus	24.25	44.74
Os06t0685700-01	Rice	nucleus	49.45	44.57
Zm00001d032683_P001	Maize	nucleus	47.39	43.91
EER94066	Sorghum	nucleus	47.86	43.83
TraesCS1A01G156600.1	Wheat	nucleus	47.7	43.75
Solyc11g069500.1.1	Tomato	nucleus	48.34	43.63
Zm00001d014013_P002	Maize	nucleus	44.53	43.63
TraesCS1D01G155100.1	Wheat	nucleus	47.54	43.6
TraesCS1B01G173700.1	Wheat	nucleus	47.7	43.56
HORVU1Hr1G041770.1	Barley	nucleus	47.39	43.46
TraesCS7D01G436800.1	Wheat	nucleus	47.54	43.17
Os10t0479900-01	Rice	nucleus	47.54	42.98
HORVU7Hr1G101270.1	Barley	nucleus	47.39	42.9
Os02t0628600-01	Rice	nucleus	46.28	42.88
TraesCS7B01G346700.1	Wheat	nucleus	47.07	42.8
EER88840	Sorghum	nucleus	48.02	42.74
TraesCS7A01G446900.1	Wheat	nucleus	47.39	42.65
Solyc06g075150.2.1	Tomato	nucleus	43.74	41.13
Zm00001d014507_P002	Maize	nucleus	47.23	41.1
Zm00001d000358_P001	Maize	nucleus	44.69	40.29
TraesCS6A01G222300.1	Wheat	nucleus	42.79	40.18
EES05458	Sorghum	nucleus	45.01	40.11
Zm00001d025871_P001	Maize	nucleus	36.77	39.46
Zm00001d017284_P001	Maize	nucleus	43.9	39.18
TraesCS2D01G376600.1	Wheat	nucleus	43.26	38.24
TraesCS2B01G397300.1	Wheat	nucleus	42.79	38.14
Zm00001d051172_P001	Maize	nucleus	42.95	38.12
HORVU2Hr1G089670.1	Barley	nucleus	41.68	37.04
KXG36152	Sorghum	nucleus	38.19	36.35
TraesCS6B01G258800.1	Wheat	mitochondrion	42.79	36.14
HORVU6Hr1G058890.2	Barley	mitochondrion	43.42	36.1
TraesCS6D01G212700.1	Wheat	plastid	43.58	35.76
KXG26729	Sorghum	nucleus, plastid	40.57	35.46
HORVU7Hr1G021880.1	Barley	nucleus	10.94	31.22
TraesCS2A01G380300.1	Wheat	nucleus	19.02	29.7
HORVU2Hr1G089660.8	Barley	nucleus	11.09	21.54
Solyc02g077560.2.1	Tomato	nucleus	24.56	20.75
Solyc11g013470.1.1	Tomato	cytosol, nucleus, vacuole	10.46	19.47
Solyc05g056040.2.1	Tomato	nucleus	18.23	17.69

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4D447	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF39	SMART:SM01019	SUPFAM:SSF101936
EnsemblPlantsGene:Solyc10g086130.1	EnsemblPlants:Solyc10g086130.1.1	UniParc:UPI0002769358	SEG:seg	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:K4D447]

Coordinates

chr10:-:65070206..65072196

Molecular Weight (calculated)

70648.6 Da

IEP (calculated)

7.322

GRAVY (calculated)

-0.419

Length

631 amino acids

Sequence
(BLAST)

001: MFLQNLLMAD NKSNCFDSRL WQACAGTMVK MPAVDSIVLY FPQGHAEHAG VNVEFRSDVK IPSYIPCRVS SIKYMAERET DEVFAKIRLT PVRLSEFFET
101: PEEEGMVKIG SDNSRKPLSF AKTLTQSDAN NGGGFSVPKN CADTIFPTLD YNVNPPVQTL SATDIHGKSW QFRHIYRGTP ERHLLTTGWS TFVNQKKLVA
201: GDSIVFLRNE NDKISIGIRR IKKKSVAMEP ETSPWWFPSV GNLTIPRGGF SAFLRDDHNT NSSWSLINRG NVKAESVIEA TKLATNGQPF EVIFYPQSTT
301: PEFFVKASRV KAALQIPWCS GMRFKMPFET EDLVISWFMG TISSVQANDP SQWPDSPWRM LQVTWDEPNL LHNVMCVNPW LVEPVSNMPT INFNPYTPPL
401: KKLRLSHTSD FPLNGHLPMS GFPNNHLEFS IDPPMSSFPI HHLLRPYGCP PNNTPVGMQG ARHAPYNLSL PDIHTNNLLS SLSPVGFPSL HHVVASPNTS
501: NNTMIPKPSR NAGISSLLTL GSSTQTNKKF DSEKTTQFVL FGQPIVIEQQ TSQSNSRISV SPRHATNSFS DGNEYKKENT SDSSDTSFVH NSVPDYLPSK
601: SFRSEENVEI GHSKVFIESE DIGQTKQLGE W

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.