Factsheet for Zm00001d032683_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000358_P001
Zm00001d001945_P002
Zm00001d004894_P001
Zm00001d008201_P001
Zm00001d010360_P001
Zm00001d014013_P002
Zm00001d014507_P002
Zm00001d016277_P002
Zm00001d017284_P001
Zm00001d025871_P001
Zm00001d026540_P002
Zm00001d032683_P001
Zm00001d037691_P003
Zm00001d038784_P001
Zm00001d039267_P005
Zm00001d039513_P001
Zm00001d040541_P001
Zm00001d043515_P002
Zm00001d051172_P001
Zm00001d052595_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	Zm00001d001945_P002	AT1G19850.1	22096563
AT2G28350.1	Zm00001d026540_P002	AT1G19850.1	22096563
AT2G28350.1	Zm00001d039267_P005	AT1G34310.1	22096563
AT2G28350.1	Zm00001d000358_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d014013_P002	AT2G28350.1	22096563
AT2G28350.1	Zm00001d014507_P002	AT2G28350.1	22096563
AT2G28350.1	Zm00001d017284_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d025871_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d032683_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d051172_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d010360_P001	AT3G16500.1	21734647
AT2G28350.1	Zm00001d016277_P002	AT3G16500.1	21734647
AT2G28350.1	Zm00001d037691_P003	AT3G16500.1	21734647
AT2G28350.1	Zm00001d038784_P001	AT3G16500.1	21734647
AT2G28350.1	Zm00001d039513_P001	AT3G16500.1	21734647
AT2G28350.1	Zm00001d043515_P002	AT3G16500.1	21734647
AT2G28350.1	Zm00001d039267_P005	AT3G61830.1	22096563
AT2G28350.1	Zm00001d010360_P001	AT5G25890.1	22096563
AT2G28350.1	Zm00001d016277_P002	AT5G25890.1	22096563
AT2G28350.1	Zm00001d037691_P003	AT5G25890.1	22096563
AT2G28350.1	Zm00001d038784_P001	AT5G25890.1	22096563
AT2G28350.1	Zm00001d039513_P001	AT5G25890.1	22096563
AT2G28350.1	Zm00001d043515_P002	AT5G25890.1	22096563
AT4G30080.1	Zm00001d008201_P001	AT3G17600.1	21798944
AT4G30080.1	Zm00001d040541_P001	AT3G17600.1	21798944
AT4G30080.1	Zm00001d004894_P001	AT5G38420.1	21798944
AT4G30080.1	Zm00001d052595_P001	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94066	Sorghum	nucleus	92.07	91.0
Zm00001d014013_P002	Maize	nucleus	83.41	88.2
TraesCS1A01G156600.1	Wheat	nucleus	81.2	80.38
TraesCS1D01G155100.1	Wheat	nucleus	81.06	80.23
TraesCS1B01G173700.1	Wheat	nucleus	81.06	79.88
HORVU1Hr1G041770.1	Barley	nucleus	80.62	79.8
Os10t0479900-01	Rice	nucleus	78.41	76.5
GSMUA_Achr4P18240_001	Banana	nucleus	60.65	68.04
GSMUA_Achr8P18930_001	Banana	nucleus	56.53	67.19
GSMUA_Achr5P18540_001	Banana	nucleus	50.81	66.67
GSMUA_Achr11P...	Banana	nucleus	51.84	65.25
GSMUA_Achr11P...	Banana	nucleus	57.71	65.07
GSMUA_Achr5P14630_001	Banana	nucleus	52.42	64.79
GSMUA_Achr5P03960_001	Banana	nucleus	53.16	64.76
VIT_06s0004g02750.t01	Wine grape	nucleus	63.29	60.62
Solyc09g007810.2.1	Tomato	nucleus	61.23	60.09
PGSC0003DMT400055522	Potato	nucleus	60.94	59.97
VIT_13s0019g04380.t01	Wine grape	nucleus	59.62	59.79
Solyc11g069500.1.1	Tomato	nucleus	60.06	58.51
KRH29907	Soybean	nucleus	59.77	58.39
PGSC0003DMT400020874	Potato	nucleus	59.91	58.37
KRH25023	Soybean	nucleus	60.06	58.35
VIT_08s0040g01810.t01	Wine grape	nucleus	53.3	58.27
KRH22880	Soybean	nucleus	56.68	57.61
Zm00001d000358_P001	Maize	nucleus	59.18	57.57
KRH26435	Soybean	nucleus	59.18	57.57
CDX68620	Canola	nucleus	52.13	57.54
CDY43553	Canola	nucleus	51.54	57.45
Zm00001d014507_P002	Maize	nucleus	60.79	57.1
KRH32480	Soybean	nucleus	58.3	56.71
Bra011162.1-P	Field mustard	nucleus	53.01	55.8
Solyc06g075150.2.1	Tomato	nucleus	54.19	54.99
PGSC0003DMT400062489	Potato	nucleus	54.48	54.88
Zm00001d017284_P001	Maize	nucleus	56.83	54.74
AT4G30080.1	Thale cress	nucleus	53.74	54.63
KRG95987	Soybean	nucleus	56.09	54.57
CDY15734	Canola	nucleus	54.04	54.12
CDY04557	Canola	nucleus	54.04	53.72
Zm00001d051172_P001	Maize	nucleus	55.95	53.59
KRG91907	Soybean	nucleus	46.11	52.95
AT2G28350.1	Thale cress	nucleus	53.6	52.67
Bra011955.1-P	Field mustard	nucleus	54.48	52.62
KRH34867	Soybean	nucleus	47.28	52.61
Zm00001d053166_P001	Maize	nucleus	10.57	48.65
Bra024109.1-P	Field mustard	nucleus	49.34	48.41
Solyc10g086130.1.1	Tomato	nucleus	43.91	47.39
Zm00001d003011_P001	Maize	nucleus	12.92	43.78
CDY46728	Canola	nucleus	53.16	42.89
Zm00001d025871_P001	Maize	nucleus	37.0	42.86
CDY30172	Canola	nucleus	49.63	40.72
Zm00001d002929_P001	Maize	nucleus	25.7	34.11
Zm00001d026687_P001	Maize	nucleus	21.88	32.25
Zm00001d026694_P001	Maize	nucleus	16.89	31.42
Zm00001d030803_P001	Maize	nucleus	15.57	31.18
Zm00001d030801_P001	Maize	nucleus	18.65	28.48
Zm00001d023704_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	10.43	25.27
Zm00001d038698_P001	Maize	nucleus	25.11	25.15
Zm00001d043922_P001	Maize	nucleus	26.14	25.14
Zm00001d006004_P001	Maize	nucleus	12.04	24.33
Zm00001d039006_P007	Maize	nucleus	26.73	23.7
Zm00001d012731_P010	Maize	nucleus	23.35	23.04
Zm00001d043431_P012	Maize	nucleus	23.35	22.98

Protein Annotations

EntrezGene:100304210	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:ADG43136.1
InterPro:Auxin_resp	InterPro:B3_DNA-bd	EMBL:BT060467	UniProt:C0HDR1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	ProteinID:ONM05726.1
InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF36	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI00019485EE	EnsemblPlantsGene:Zm00001d032683	EnsemblPlants:Zm00001d032683_P001
EnsemblPlants:Zm00001d032683_T001	SEG:seg	:	:	:	:

Description

ARF-transcription factor 2Auxin response factor 16

Coordinates

chr1:-:234266863..234271357

Molecular Weight (calculated)

74547.2 Da

IEP (calculated)

7.924

GRAVY (calculated)

-0.271

Length

681 amino acids

Sequence
(BLAST)

001: MKEVAEERCL DPQLWHACAG GMVQMPPVRS RVYYFPQGHA EHAHGGGAAD LAGARALPSL VLCSVTGVRF LADPETDEVF AKIRLVPVAP GEVEFREPDE
101: FSVDPADARE KLSSFAKTLT QSDANNGGGF SVPRYCAETI FPKLDYRADP PVQTVLAKDV HGEVWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLVAGDSIV
201: FLRTEHGELC VGIRRVKRVS CGGMECMSGW NAPGYGALSA FLKDEEGKMM KSHGGYMRGR GKVKITDVVN AASLAASGQP FEVVYYPRAS TPEFVVKAAS
301: VQNAMRNQWC PGMRFKMAFE TEDSSRISWF MGTIASAQVA DPIRWPNSPW RLLQVAWDEP DLLQNVKCVN PWLVEIVSSI PPIHLGPFSP PRKKLRVPHH
401: PDFPFDGQLL NPIFHGNPLG PSNGGGALRC FSDIAPAGIQ GARHAQFGLP LTDRQLNKLH LGLFQGGGFK RRLDAITPPC PISRGFVIGS APVDESVSCV
501: LTIGTPRAAE RSDDRKKPHL MLFGKPILTE QQMSSRGSRE TLSPEATGNS SDGSVQKTGN VSDGSGSSIC IGSSSRGREA SRLGFEFEAG HCKVFVESED
601: VGRTIDLSVF GSYEELYGQL ADMFGIEKAE VMSHLCYRDA AGAVKRTGDE PFCDFMKVAR RLTIVESTEG RLQKPLVEYM A

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.