Factsheet for PGSC0003DMT400020874

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000345
PGSC0003DMT400006709
PGSC0003DMT400009660
PGSC0003DMT400020839
PGSC0003DMT400020874
PGSC0003DMT400031965
PGSC0003DMT400062489

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	PGSC0003DMT400009660	AT1G19850.1	22096563
AT2G28350.1	PGSC0003DMT400031965	AT1G34310.1	22096563
AT2G28350.1	PGSC0003DMT400020874	AT2G28350.1	22096563
AT2G28350.1	PGSC0003DMT400062489	AT2G28350.1	22096563
AT2G28350.1	PGSC0003DMT400006709	AT3G16500.1	21734647
AT2G28350.1	PGSC0003DMT400000345	AT3G61830.1	22096563
AT2G28350.1	PGSC0003DMT400020839	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069500.1.1	Tomato	nucleus	96.71	96.71
VIT_06s0004g02750.t01	Wine grape	nucleus	71.24	70.04
PGSC0003DMT400062489	Potato	nucleus	67.53	69.82
KRH22880	Soybean	nucleus	64.23	67.01
GSMUA_Achr8P18930_001	Banana	nucleus	53.93	65.79
GSMUA_Achr4P18240_001	Banana	nucleus	57.08	65.73
KRH26435	Soybean	nucleus	65.24	65.14
KRH29907	Soybean	nucleus	63.66	63.85
GSMUA_Achr11P...	Banana	nucleus	49.36	63.77
KRH25023	Soybean	nucleus	63.95	63.77
GSMUA_Achr5P14630_001	Banana	nucleus	50.07	63.52
PGSC0003DMT400055522	Potato	nucleus	62.37	63.01
GSMUA_Achr5P18540_001	Banana	nucleus	46.64	62.81
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	10.01	62.5
GSMUA_Achr5P03960_001	Banana	nucleus	49.93	62.43
Zm00001d014013_P002	Maize	nucleus	57.08	61.96
GSMUA_Achr11P...	Banana	nucleus	52.93	61.26
EER94066	Sorghum	nucleus	59.37	60.23
CDY15734	Canola	nucleus	58.51	60.15
TraesCS1A01G156600.1	Wheat	nucleus	59.08	60.03
TraesCS1D01G155100.1	Wheat	nucleus	59.08	60.03
TraesCS1B01G173700.1	Wheat	nucleus	59.23	59.91
Zm00001d032683_P001	Maize	nucleus	58.37	59.91
HORVU1Hr1G041770.1	Barley	nucleus	58.8	59.74
CDY04557	Canola	nucleus	58.51	59.71
TraesCS7B01G346700.1	Wheat	nucleus	58.94	59.37
Bra011955.1-P	Field mustard	nucleus	59.51	59.01
TraesCS7D01G436800.1	Wheat	nucleus	58.66	58.99
AT2G28350.1	Thale cress	nucleus	58.37	58.87
HORVU7Hr1G101270.1	Barley	nucleus	58.66	58.82
Os10t0479900-01	Rice	nucleus	58.66	58.74
Os06t0685700-01	Rice	nucleus	58.8	58.71
TraesCS7A01G446900.1	Wheat	nucleus	58.66	58.49
EER88840	Sorghum	nucleus	58.37	57.55
Zm00001d014507_P002	Maize	nucleus	57.94	55.86
Os02t0628600-01	Rice	nucleus	54.36	55.8
Zm00001d000358_P001	Maize	nucleus	55.79	55.71
Os04t0519700-01	Rice	nucleus	31.04	55.36
HORVU3Hr1G081710.1	Barley	cytosol	8.3	55.24
HORVU5Hr1G024100.1	Barley	cytosol	11.87	54.97
EES05458	Sorghum	nucleus	54.94	54.24
Zm00001d017284_P001	Maize	nucleus	54.08	53.47
TraesCS6A01G222300.1	Wheat	nucleus	50.79	52.83
Zm00001d051172_P001	Maize	nucleus	52.22	51.34
TraesCS2B01G397300.1	Wheat	nucleus	50.36	49.72
TraesCS2D01G376600.1	Wheat	nucleus	50.64	49.58
TraesCS6B01G258800.1	Wheat	mitochondrion	52.5	49.13
HORVU2Hr1G089670.1	Barley	nucleus	49.07	48.31
HORVU6Hr1G058890.2	Barley	mitochondrion	52.07	47.96
TraesCS6D01G212700.1	Wheat	plastid	52.22	47.46
PGSC0003DMT400071449	Potato	nucleus	23.75	45.98
KXG36152	Sorghum	nucleus	42.35	44.65
KXG26729	Sorghum	nucleus, plastid	44.78	43.35
TraesCS2A01G380300.1	Wheat	nucleus	24.89	43.07
Zm00001d025871_P001	Maize	nucleus	34.48	40.99
HORVU7Hr1G021880.1	Barley	nucleus	11.59	36.65
PGSC0003DMT400045323	Potato	cytosol	13.16	34.33
HORVU2Hr1G089660.8	Barley	nucleus	12.45	26.77
PGSC0003DMT400081282	Potato	nucleus	27.18	25.4
PGSC0003DMT400059999	Potato	nucleus	18.03	19.38

Protein Annotations

EntrezGene:102586871	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	UniProt:M1AE84	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507
EnsemblPlantsGene:PGSC0003DMG400008081	PGSC:PGSC0003DMG400008081	EnsemblPlants:PGSC0003DMT400020874	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF27	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI00029577AF	RefSeq:XP_006340187.1	RefSeq:XP_006340188.1
SEG:seg	:	:	:	:	:

Description

Auxin response factor [Source:PGSC_GENE;Acc:PGSC0003DMG400008081]

Coordinates

chr11:+:41583939..41588667

Molecular Weight (calculated)

77256.7 Da

IEP (calculated)

8.071

GRAVY (calculated)

-0.344

Length

699 amino acids

Sequence
(BLAST)

001: MKEVLEKCVD SQLWHACAGG MVQIPPVNSK VYYFPQGHAE HTLMNVDFSA LPRSPALILC RVAAVKFLAD PETDEVYAKI RVVPVGNKGN DFDDDDDILG
101: SNESGTTEKP NSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVTAKDVHG ETWKFRHIYR GTPRRHLLTT GWSSFVNQKK LVAGDSIVFL
201: RGENGELYVG IRRAKRGGIG GPEAPSGWNS GAGNYGGFSA FLREEMSKNG NLSSPTGSLR GKVRVRPESV VEAAYLAASG QPFEVVYYPR ANTPEFCVRA
301: SSVNTAMRTQ WCSGMRFKMA FETEDSSRIS WFMGTISSIQ LADPIRWPNS PWRLLQVAWD EPDLLQNVKH VSPWLVELVS NMPVIHHSPF SPPRKKLRLP
401: PDFSLDSQFQ LPFFSGNPLR SSSPFCCLSD NITAGIQGAR HAQFGVPLLD LHLSNNLPSG LLPPSFQRVA ANSQLPNVIN KYQNDRNDNI SCLLTMGTSS
501: KTLEKNDSVN TPRFLLFGQP ILTEQQISNG CSVTAPQVVQ TGKDLGRIQL INEKHPPEQK GSIQDNLTSA TFFWNRGYHA AELGVLDTGH CKVFLESEDV
601: GRTLDLSVMG SYEELYRRLA KMFGLERPDM LTRVLYHDAT GAVKHTGDEP FSDFVKSAKR LTILMNSSSN IKRKWITGLA TAERGLDSSN QAGPLSIFA

Best Arabidopsis Sequence Match ( AT2G28350.1 )
(BLAST)

001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA

Arabidopsis Description

ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.