Factsheet for GSMUA_Achr8P18930_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20000_001
GSMUA_Achr1P20010_001
GSMUA_Achr1P20040_001
GSMUA_Achr2P19760_001
GSMUA_Achr2P22730_001
GSMUA_Achr3P16300_001
GSMUA_Achr4P18240_001
GSMUA_Achr5P03960_001
GSMUA_Achr5P09310_001
GSMUA_Achr5P14630_001
GSMUA_Achr5P18540_001
GSMUA_Achr6P09710_001
GSMUA_Achr6P36980_001
GSMUA_Achr7P13680_001
GSMUA_Achr7P24330_001
GSMUA_Achr8P18400_001
GSMUA_Achr8P18930_001
GSMUA_Achr8P29850_001
GSMUA_Achr9P16800_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	GSMUA_Achr1P20000_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr1P20010_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr1P20040_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr6P36980_001	AT1G19850.1	22096563
AT2G28350.1	GSMUA_Achr10P...	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr2P19760_001	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr7P24330_001	AT1G34310.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT1G34310.1	22096563
AT2G28350.1	GSMUA_Achr11P...	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr11P...	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr4P18240_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P03960_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P14630_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr5P18540_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr8P18930_001	AT2G28350.1	22096563
AT2G28350.1	GSMUA_Achr3P16300_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr5P09310_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr7P13680_001	AT3G16500.1	21734647
AT2G28350.1	GSMUA_AchrUn_...	AT3G16500.1	21734647
AT2G28350.1	GSMUA_Achr10P...	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr2P19760_001	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr7P24330_001	AT3G61830.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT3G61830.1	22096563
AT2G28350.1	GSMUA_Achr3P16300_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_Achr5P09310_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_Achr7P13680_001	AT5G25890.1	22096563
AT2G28350.1	GSMUA_AchrUn_...	AT5G25890.1	22096563
AT4G30080.1	GSMUA_Achr8P29850_001	AT3G17600.1	21798944
AT4G30080.1	GSMUA_Achr9P16800_001	AT3G17600.1	21798944
AT4G30080.1	GSMUA_Achr10P...	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr2P22730_001	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr6P09710_001	AT5G38420.1	21798944
AT4G30080.1	GSMUA_Achr8P18400_001	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P18540_001	Banana	nucleus	66.14	73.03
GSMUA_Achr4P18240_001	Banana	nucleus	75.74	71.5
GSMUA_Achr11P...	Banana	nucleus	65.44	69.32
GSMUA_Achr11P...	Banana	nucleus	71.73	68.05
GSMUA_Achr5P03960_001	Banana	nucleus	64.92	66.55
GSMUA_Achr5P14630_001	Banana	nucleus	63.18	65.7
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	12.39	63.39
HORVU3Hr1G081710.1	Barley	cytosol	10.99	60.0
HORVU5Hr1G024100.1	Barley	cytosol	15.53	58.94
Zm00001d014013_P002	Maize	nucleus	65.44	58.23
Os06t0685700-01	Rice	nucleus	69.63	57.0
EER94066	Sorghum	nucleus	68.41	56.89
VIT_06s0004g02750.t01	Wine grape	nucleus	70.51	56.82
VIT_08s0040g01810.t01	Wine grape	nucleus	61.61	56.66
Zm00001d032683_P001	Maize	nucleus	67.19	56.53
VIT_13s0019g04380.t01	Wine grape	nucleus	66.67	56.26
TraesCS1A01G156600.1	Wheat	nucleus	67.54	56.25
TraesCS1B01G173700.1	Wheat	nucleus	67.71	56.15
TraesCS1D01G155100.1	Wheat	nucleus	67.02	55.81
HORVU1Hr1G041770.1	Barley	nucleus	67.02	55.81
TraesCS7D01G436800.1	Wheat	nucleus	67.36	55.54
PGSC0003DMT400055522	Potato	nucleus	67.02	55.49
CDY43553	Canola	nucleus	59.16	55.48
TraesCS7B01G346700.1	Wheat	nucleus	67.19	55.48
CDX68620	Canola	nucleus	59.69	55.43
TraesCS7A01G446900.1	Wheat	nucleus	67.36	55.06
Solyc09g007810.2.1	Tomato	nucleus	66.67	55.04
EER88840	Sorghum	nucleus	68.06	55.01
HORVU7Hr1G101270.1	Barley	nucleus	66.84	54.95
KRH22880	Soybean	nucleus	64.05	54.78
Os10t0479900-01	Rice	nucleus	66.67	54.73
Solyc11g069500.1.1	Tomato	nucleus	66.67	54.65
KRH29907	Soybean	nucleus	65.97	54.23
KRH25023	Soybean	nucleus	66.14	54.07
PGSC0003DMT400020874	Potato	nucleus	65.79	53.93
KRH26435	Soybean	nucleus	65.62	53.71
Zm00001d014507_P002	Maize	nucleus	67.89	53.66
Os02t0628600-01	Rice	nucleus	63.7	53.6
Bra011162.1-P	Field mustard	nucleus	60.03	53.17
KRH32480	Soybean	nucleus	64.22	52.57
KRG95987	Soybean	nucleus	63.35	51.86
AT4G30080.1	Thale cress	nucleus	60.56	51.79
Zm00001d000358_P001	Maize	nucleus	63.0	51.57
EES05458	Sorghum	nucleus	63.18	51.13
CDY15734	Canola	nucleus	60.38	50.88
CDY04557	Canola	nucleus	60.73	50.8
PGSC0003DMT400062489	Potato	nucleus	59.86	50.74
Solyc06g075150.2.1	Tomato	nucleus	59.34	50.67
Os04t0519700-01	Rice	nucleus	34.55	50.51
Zm00001d017284_P001	Maize	nucleus	62.3	50.49
AT2G28350.1	Thale cress	nucleus	60.91	50.36
TraesCS6A01G222300.1	Wheat	nucleus	58.99	50.3
Bra011955.1-P	Field mustard	nucleus	60.91	49.5
Zm00001d051172_P001	Maize	nucleus	60.38	48.66
KRG91907	Soybean	nucleus	49.74	48.06
TraesCS2B01G397300.1	Wheat	nucleus	59.16	47.88
TraesCS2D01G376600.1	Wheat	nucleus	59.34	47.62
TraesCS6B01G258800.1	Wheat	mitochondrion	61.78	47.39
KRH34867	Soybean	nucleus	50.44	47.22
HORVU6Hr1G058890.2	Barley	mitochondrion	61.61	46.51
HORVU2Hr1G089670.1	Barley	nucleus	57.24	46.2
TraesCS6D01G212700.1	Wheat	plastid	61.43	45.77
Bra024109.1-P	Field mustard	nucleus	55.15	45.53
TraesCS2A01G380300.1	Wheat	nucleus	30.89	43.81
Solyc10g086130.1.1	Tomato	nucleus	47.82	43.42
KXG36152	Sorghum	nucleus	49.21	42.53
KXG26729	Sorghum	nucleus, plastid	53.05	42.11
CDY46728	Canola	nucleus	59.51	40.4
Zm00001d025871_P001	Maize	nucleus	41.19	40.14
GSMUA_Achr9P29480_001	Banana	nucleus	31.24	39.96
CDY30172	Canola	nucleus	55.5	38.31
HORVU7Hr1G021880.1	Barley	nucleus	13.79	35.75
GSMUA_Achr6P18900_001	Banana	plastid	25.31	35.28
GSMUA_Achr10P...	Banana	nucleus	26.35	30.2
GSMUA_Achr10P...	Banana	nucleus	26.35	26.26
HORVU2Hr1G089660.8	Barley	nucleus	14.66	25.85
GSMUA_Achr7P11000_001	Banana	nucleus	24.78	23.75
GSMUA_Achr4P10590_001	Banana	nucleus	26.35	21.15
GSMUA_Achr4P02750_001	Banana	nucleus	25.48	20.33
GSMUA_Achr7P25330_001	Banana	nucleus	25.48	20.08
GSMUA_Achr3P31350_001	Banana	nucleus	24.96	18.03

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr8G18930_001	EnsemblPlants:GSMUA_Achr8P18930_001
EnsemblPlants:GSMUA_Achr8T18930_001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0TRP6	InterPro:PB1_dom
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF27
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002956247	SEG:seg	:	:

Description

Auxin response factor 18 [Source:GMGC_GENE;Acc:GSMUA_Achr8G18930_001]

Coordinates

chr8:-:23847317..23850870

Molecular Weight (calculated)

63234.7 Da

IEP (calculated)

8.532

GRAVY (calculated)

-0.308

Length

573 amino acids

Sequence
(BLAST)

001: MKEPPMKDND KCLDSQLWHA CAGGMVQMPA VNSKVYYFPQ GHAEHAQADK ETDEVFAKIQ MVPISNSESD YGEGDGLGLS MNEFDAQEKP ASFAKTLTQS
101: DANNGGGFSV PRYCAETIFP RLDYSTDPPV QTVIAKDVHG EVWKFRHIYR GTPRRHLLTT GWSIFVNQKK LVAGDSIVFL RAENGDLCIG IRRAKRGTGG
201: NFASSGGMRG RGRVRADAVV GTASLAASGQ PFEVVYYPRA GTPEFCVKAV AVRAAMRIQW CPGMRFKMAF ETEDSSRISW FMGTISSVQV SDPVRWPISP
301: WRLLQVTWDE PDFLQNVKCV NPWLVELVSH MPAINLAHFS PPRKKPRIPQ HPDLPFEGQF NTPMVARIPL RSGGSPFCCY SDSAPAGIQG ARHANFGLRN
401: LHLNKLQMGL FHAGLHRVDQ ATPNSRISMG VIVGNPTPPQ LVLFGQPILT EQQVSLSKSE NGVSLGVTGK SSTGGDLKKT TYASGELGLE SGHCKVFMES
501: DDVGRTLDLS VFGSYEELYV RLSDMFGIEK LKMMNHVFYK DVAGAVKHTR DEPFSDFMKT ARRLMILTDS GSR

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.