Factsheet for GSMUA_Achr4P10590_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P31350_001
GSMUA_Achr4P02750_001
GSMUA_Achr4P10590_001
GSMUA_Achr7P11000_001
GSMUA_Achr7P25330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	GSMUA_Achr10P...	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr3P31350_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr4P02750_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr4P10590_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr7P11000_001	AT2G33860.1	24485461
AT2G33860.1	GSMUA_Achr7P25330_001	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053166_P001	Maize	nucleus	15.27	73.65
GSMUA_Achr4P02750_001	Banana	nucleus	72.27	71.87
GSMUA_Achr7P25330_001	Banana	nucleus	65.69	64.51
GSMUA_Achr3P31350_001	Banana	nucleus	68.35	61.54
GSMUA_Achr10P...	Banana	nucleus	41.6	51.65
GSMUA_Achr7P11000_001	Banana	nucleus	41.18	49.16
AT2G33860.1	Thale cress	nucleus	40.48	47.53
CDY17209	Canola	nucleus	40.06	47.51
TraesCS3A01G246000.1	Wheat	nucleus	44.26	47.45
Bra021885.1-P	Field mustard	nucleus	36.55	47.28
Bra005465.1-P	Field mustard	nucleus	40.06	47.27
CDY37679	Canola	nucleus	39.08	46.97
CDY27929	Canola	nucleus	39.5	46.38
EES03412	Sorghum	nucleus	44.96	45.73
Zm00001d043922_P001	Maize	nucleus	45.24	45.62
Os05t0563400-01	Rice	nucleus	45.38	45.51
TraesCS3A01G292400.1	Wheat	nucleus	41.6	45.48
TraesCS3B01G273400.2	Wheat	nucleus	44.82	45.33
TraesCS3B01G327000.1	Wheat	nucleus	41.46	44.85
Os01t0670800-02	Rice	nucleus	45.1	44.85
EES18676	Sorghum	nucleus	46.22	44.65
VIT_10s0003g00420.t01	Wine grape	nucleus	48.6	44.54
HORVU3Hr1G072340.2	Barley	nucleus	41.6	43.81
KXG22343	Sorghum	nucleus	41.46	43.79
TraesCS1D01G404400.1	Wheat	nucleus	44.96	43.67
TraesCS3D01G292100.1	Wheat	plastid	42.3	43.58
TraesCS1A01G396400.1	Wheat	nucleus	44.82	43.54
TraesCS3D01G245400.2	Wheat	nucleus	45.52	43.51
KRH21341	Soybean	nucleus	44.82	43.48
KRH50128	Soybean	nucleus	43.0	43.3
KRH20373	Soybean	nucleus	43.28	43.28
TraesCS1B01G424700.1	Wheat	nucleus	44.96	43.26
TraesCS1B01G347900.2	Wheat	nucleus	42.02	42.98
Zm00001d038698_P001	Maize	nucleus	40.9	42.94
Zm00001d039006_P007	Maize	nucleus	46.08	42.84
KXG33384	Sorghum	nucleus	41.04	42.77
HORVU1Hr1G076690.6	Barley	nucleus	41.74	42.75
TraesCS1A01G334900.1	Wheat	nucleus	42.02	42.43
TraesCS1D01G337400.1	Wheat	nucleus	41.32	42.26
Zm00001d012731_P010	Maize	nucleus	40.76	42.17
Os05t0515400-01	Rice	nucleus	36.69	42.12
PGSC0003DMT400081282	Potato	nucleus	43.7	41.71
Solyc02g077560.2.1	Tomato	nucleus	43.28	41.37
Zm00001d043431_P012	Maize	nucleus	39.92	41.19
Os01t0753500-01	Rice	plastid	41.88	40.9
Zm00001d006004_P001	Maize	nucleus	18.49	39.17
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	44.12	36.84
GSMUA_Achr9P29480_001	Banana	nucleus	18.49	29.46
GSMUA_Achr11P...	Banana	nucleus	21.57	28.47
GSMUA_Achr11P...	Banana	nucleus	22.97	27.15
GSMUA_Achr8P18930_001	Banana	nucleus	21.15	26.35
GSMUA_Achr4P18240_001	Banana	nucleus	22.27	26.19
GSMUA_Achr5P18540_001	Banana	nucleus	18.63	25.63
GSMUA_Achr5P14630_001	Banana	nucleus	19.19	24.86
GSMUA_Achr5P03960_001	Banana	nucleus	19.33	24.69
GSMUA_Achr10P...	Banana	nucleus	16.25	23.2
GSMUA_Achr6P18900_001	Banana	plastid	12.61	21.9

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G10590_001	EnsemblPlants:GSMUA_Achr4P10590_001	EnsemblPlants:GSMUA_Achr4T10590_001	InterPro:IPR003340
InterPro:IPR015300	UniProt:M0SMS6	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF5	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002956461	SEG:seg	:

Description

Putative Auxin response factor 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G10590_001]

Coordinates

chr4:+:7696926..7703389

Molecular Weight (calculated)

78544.4 Da

IEP (calculated)

6.966

GRAVY (calculated)

-0.301

Length

714 amino acids

Sequence
(BLAST)

001: MGIDLNTIEE EDEEPEHPAH AAPPPAAAAV EDAFQGTPVC LELWHACAGP RIWLPKKGSL VVYLPQGHME HLGDGGGGGA DGGGRGGICR RDVPPHCLCR
101: VIDVKLHADA ATDDVYAQLS LLAESEDFER RMKMGEVEGN EEGDDVECIN RSSVPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK LQRPSQELIA
201: KDLHGMEWRF RHIYRGQPRR HLLTTGWSAF VNRKKLISGD AVLFLRGTDG ELRLGIRRAV QFKSSNPVSA HPSGNSTLAT LADIANAVST RKVFHVYYNP
301: RANSSDFIVP YWKFVKSFNS SISVGIRFKM IYESDDASER RSTGLVTGIS DMDPVRWPGS KWRCLLVNWD VDADTNQQNR ISPWEIEPTG SVSGSGSLST
401: VGSKRAKIGL PSVNMDFPIP NGNGCPDLRE SASIHKVLQG QEFMRLGRVR ISHGKSDSSF NRTGFSESIR FQKVLQGQEV FSRNPPFLGA PCDAHVRNGV
501: YGQFDDVLTS RAESRLPIAP HGYVTLLQQS LPSIQAFSPS SVLMFQDASC VSLSAHSMPG MNYQDRGDEG CRFAMLNGSE PLHREESNFP SWPPTLACHF
601: ANQQCKMVKV HDPVLDGKLD FENERSVSRK GCRLFGFPLT ERIPVANLVD KPPPVTPATS MPQMPAKPVG CSSALYALPF SCLVSDAFNS QLLCQCVRLY
701: YLLSLCCSIL CSLV

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.