Factsheet for Bra021885.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005465.1-P
Bra021885.1-P
Bra024406.1-P
Bra037824.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	Bra005465.1-P	AT2G33860.1	24485461
AT2G33860.1	Bra021885.1-P	AT2G33860.1	24485461
AT2G33860.1	Bra024406.1-P	AT5G65670.1	21734647
AT2G33860.1	Bra037824.1-P	AT5G65670.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37679	Canola	nucleus	94.75	88.05
Bra005465.1-P	Field mustard	nucleus	86.23	78.68
AT2G33860.1	Thale cress	nucleus	86.41	78.45
Zm00001d053166_P001	Maize	nucleus	20.47	76.35
GSMUA_Achr10P...	Banana	nucleus	45.47	43.65
Bra029293.1-P	Field mustard	nucleus	19.2	43.62
KRH20373	Soybean	nucleus	55.43	42.86
KRH50128	Soybean	nucleus	53.8	41.89
VIT_10s0003g00420.t01	Wine grape	nucleus	58.7	41.59
KRH21341	Soybean	nucleus	54.89	41.17
GSMUA_Achr7P11000_001	Banana	nucleus	42.75	39.46
Zm00001d006004_P001	Maize	nucleus	23.91	39.17
PGSC0003DMT400081282	Potato	nucleus	51.99	38.37
Solyc02g077560.2.1	Tomato	nucleus	51.45	38.02
TraesCS3A01G246000.1	Wheat	nucleus	45.83	37.99
Os01t0670800-02	Rice	nucleus	49.28	37.88
Os05t0563400-01	Rice	nucleus	48.37	37.5
EES03412	Sorghum	nucleus	47.28	37.18
Zm00001d043922_P001	Maize	nucleus	47.1	36.72
GSMUA_Achr4P10590_001	Banana	nucleus	47.28	36.55
EES18676	Sorghum	nucleus	48.91	36.54
TraesCS1D01G404400.1	Wheat	nucleus	48.55	36.46
GSMUA_Achr4P02750_001	Banana	nucleus	47.28	36.35
TraesCS1B01G424700.1	Wheat	nucleus	48.73	36.25
TraesCS1A01G396400.1	Wheat	nucleus	48.19	36.19
TraesCS3B01G273400.2	Wheat	nucleus	45.83	35.84
TraesCS3A01G292400.1	Wheat	nucleus	42.21	35.68
TraesCS3B01G327000.1	Wheat	nucleus	42.21	35.3
TraesCS1D01G337400.1	Wheat	nucleus	44.2	34.96
HORVU1Hr1G076690.6	Barley	nucleus	44.02	34.86
GSMUA_Achr7P25330_001	Banana	nucleus	45.83	34.8
Zm00001d039006_P007	Maize	nucleus	48.19	34.64
TraesCS1A01G334900.1	Wheat	nucleus	44.2	34.51
Zm00001d043431_P012	Maize	nucleus	43.12	34.39
KXG33384	Sorghum	nucleus	42.57	34.31
TraesCS1B01G347900.2	Wheat	nucleus	43.3	34.24
Zm00001d012731_P010	Maize	nucleus	42.75	34.2
TraesCS3D01G292100.1	Wheat	plastid	42.93	34.2
TraesCS3D01G245400.2	Wheat	nucleus	46.01	34.0
HORVU3Hr1G072340.2	Barley	nucleus	41.49	33.78
KXG22343	Sorghum	nucleus	40.58	33.14
Os01t0753500-01	Rice	plastid	43.84	33.11
Zm00001d038698_P001	Maize	nucleus	40.4	32.79
Os05t0515400-01	Rice	nucleus	36.59	32.48
GSMUA_Achr3P31350_001	Banana	nucleus	46.2	32.16
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	48.19	31.11
Bra011162.1-P	Field mustard	nucleus	26.27	22.41
Bra003665.1-P	Field mustard	nucleus	22.1	22.34
Bra015374.1-P	Field mustard	nucleus	17.39	22.27
Bra015651.1-P	Field mustard	nucleus	21.92	22.16
Bra011955.1-P	Field mustard	nucleus	27.72	21.7
Bra024109.1-P	Field mustard	nucleus	23.19	18.44

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	ProteinID:AFD01297	ProteinID:AFD01297.1	InterPro:Auxin_resp
InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra021885	EnsemblPlants:Bra021885.1	EnsemblPlants:Bra021885.1-P	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	UniProt:H9B4C4	InterPro:IPR003340	InterPro:IPR015300	EMBL:JN979463	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF5	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI000253578B	SEG:seg	:	:	:	:

Description

AT2G33860 (E=3e-138) ETT, ARF3 | ETT (ETTIN); DNA binding / transcription factor

Coordinates

chrA04:-:15033262..15035794

Molecular Weight (calculated)

60467.7 Da

IEP (calculated)

6.956

GRAVY (calculated)

-0.460

Length

552 amino acids

Sequence
(BLAST)

001: MGGLIDLNVT EEEDETLSSA SGSLSTSNSS SSAFVANGSS SSSSSSGVCL ELWHACAGPL ISLPKRGSLV LYFPQGHLEQ QAPGFSAAIY GLPPHVFCRI
101: LDVKLHAETD TDEVYAQVSL LPESEDIERK LREGVIDVVD GGDQEDYEVV KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SKPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSG FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQFEGASAFS AQYNQNTNHN NFSEVAHAIS TNSAFNIYYN
301: PKSLGIITGI SDLDPIRWPG SKWRCLIVRW DDNEANRHQQ RVSPWEIEPS GSISSSGSFM TTGPKRSRIG FPDIPVSEGI HATDFEESLR FQRVLQGQEK
401: FPGFINTSSD GGAGARRGRF KGTEFGDSYG FHKVLQGQET VPAYSMTAHQ QHGLSQGNFS SRFLPPSLVH VSSSPSSVLI TNSNRPNGRL EEHQGGSGSR
501: CRLFGFPLRD ESTAMVVPCV EGQKGVSGVQ SNHHSQGRGI YGMRDMLLDI AL

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.