CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03412
EES18676
KXG22343
KXG33384

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	EES03412	AT2G33860.1	24485461
AT2G33860.1	EES18676	AT2G33860.1	24485461
AT2G33860.1	KXG22343	AT2G33860.1	24485461
AT2G33860.1	KXG33384	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038698_P001	Maize	nucleus	88.17	87.65
TraesCS1B01G347900.2	Wheat	nucleus	64.5	62.46
Os05t0515400-01	Rice	nucleus	57.25	62.22
HORVU1Hr1G076690.6	Barley	nucleus	63.61	61.69
TraesCS1A01G334900.1	Wheat	nucleus	64.2	61.39
TraesCS1D01G337400.1	Wheat	nucleus	63.17	61.17
KXG33384	Sorghum	nucleus	55.18	54.45
AT2G33860.1	Thale cress	nucleus	37.57	41.78
EES03412	Sorghum	nucleus	43.34	41.74
GSMUA_Achr4P10590_001	Banana	nucleus	43.79	41.46
CDY37679	Canola	nucleus	36.09	41.08
EES18676	Sorghum	nucleus	44.67	40.87
CDY17209	Canola	nucleus	36.39	40.86
Bra021885.1-P	Field mustard	nucleus	33.14	40.58
Bra005465.1-P	Field mustard	nucleus	36.24	40.5
CDY27929	Canola	nucleus	36.39	40.46
GSMUA_Achr4P02750_001	Banana	nucleus	42.46	39.97
GSMUA_Achr7P25330_001	Banana	nucleus	40.83	37.96
PGSC0003DMT400081282	Potato	nucleus	41.57	37.57
KRH20373	Soybean	nucleus	39.5	37.4
KRH50128	Soybean	nucleus	39.2	37.38
Solyc02g077560.2.1	Tomato	nucleus	40.98	37.08
KRH21341	Soybean	nucleus	40.09	36.82
VIT_10s0003g00420.t01	Wine grape	nucleus	42.16	36.59
GSMUA_Achr3P31350_001	Banana	nucleus	42.9	36.57
EER94066	Sorghum	nucleus	25.3	24.82
EES05458	Sorghum	nucleus	25.89	24.72
EER88840	Sorghum	nucleus	25.44	24.26
EES13156	Sorghum	nucleus	17.75	23.17
KXG36152	Sorghum	nucleus	22.34	22.78
KXG26729	Sorghum	nucleus, plastid	23.67	22.16

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	UniProt:A0A1B6P9I2	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KXG22343
ProteinID:KXG22343	ProteinID:KXG22343.1	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF23	SMART:SM01019	EnsemblPlantsGene:SORBI_3009G196900	SUPFAM:SSF101936	unigene:Sbi.21074	UniParc:UPI0003C68213
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:54743400..54749313

Molecular Weight (calculated)

73467.6 Da

IEP (calculated)

6.667

GRAVY (calculated)

-0.364

Length

676 amino acids

Sequence
(BLAST)

001: MGIDLNSVEE DEQAPAGAVC CGELWHACAG AGVALPRRGS AVVYLPQAHL AAGGDGGELP ALAAAPRVPP HVVCRVVDVE LRADAATDEV YARLALVAED
101: KMFGRNIHDG ETEEKDGEKE DGDGEKLTSH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYEQLRPSQ ELIAKDLHGM KWRFRHIYRG QPRRHLLTTG
201: WSSFINKKKL VSGDAVLFLR GSDGELRLGV RRAVQLKNEA LLEAVNCTDS KLLMLSAVAS SLDNRSIFHI CFNPRIGASE FIVPYCKFLK GLNYPFSIGT
301: RFKVGCKNED ANERSFGLIS GISEVDPIRW PGSKWKSLLV KWDGDTKYSH QNRVSPWDIE RVGSSVSVTH CLSSCVSKRM KLCFPQGNLD APILDGNGRP
401: DSVGTEGFHQ VLQGQELVRV HGAACSHSSD TPRCQGSYGR RFSADVWNCK MNDGHLNTTG FAYQPLGFSE SVKFSEVLQG QEMSQVAAPS FMRDAFSAGT
501: QNGRVRSFDY VQRSAATQGY ALQQFNLPAT EVHSPSSVLM FNQTMVPQPE LDGLTNREEA YGSGYSSIAI QREAEPWPST QQQRVRENGS EPLDTTEASA
601: PARIAKSGSV DRGVGGSSCK LFGFSLTEKI LGTEGVGGKE GNYEADRQTP RVLDLLGHGH STPGALHALC AAPLGI

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.