Factsheet for TraesCS1A01G334900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G334900.1
TraesCS1A01G396400.1
TraesCS1B01G347900.2
TraesCS1B01G424700.1
TraesCS1D01G337400.1
TraesCS1D01G404400.1
TraesCS3A01G246000.1
TraesCS3A01G292400.1
TraesCS3B01G273400.2
TraesCS3B01G327000.1
TraesCS3D01G245400.2
TraesCS3D01G292100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33860.1	TraesCS1A01G334900.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1A01G396400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1B01G347900.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS1B01G424700.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1D01G337400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS1D01G404400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3A01G246000.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3A01G292400.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3B01G273400.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS3B01G327000.1	AT2G33860.1	24485461
AT2G33860.1	TraesCS3D01G245400.2	AT2G33860.1	24485461
AT2G33860.1	TraesCS3D01G292100.1	AT2G33860.1	24485461

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G337400.1	Wheat	nucleus	93.49	94.7
TraesCS1B01G347900.2	Wheat	nucleus	93.35	94.56
HORVU1Hr1G076690.6	Barley	nucleus	86.85	88.09
KXG22343	Sorghum	nucleus	61.39	64.2
Os05t0515400-01	Rice	nucleus	56.01	63.67
Zm00001d038698_P001	Maize	nucleus	59.83	62.21
TraesCS3A01G292400.1	Wheat	nucleus	57.0	61.72
TraesCS3A01G246000.1	Wheat	nucleus	44.7	47.45
Bra021885.1-P	Field mustard	nucleus	34.51	44.2
CDY37679	Canola	nucleus	37.06	44.11
AT2G33860.1	Thale cress	nucleus	37.77	43.91
CDY17209	Canola	nucleus	36.63	43.02
CDY27929	Canola	nucleus	36.78	42.76
Bra005465.1-P	Field mustard	nucleus	36.49	42.64
TraesCS1A01G396400.1	Wheat	nucleus	44.13	42.45
GSMUA_Achr4P10590_001	Banana	nucleus	42.43	42.02
GSMUA_Achr4P02750_001	Banana	nucleus	41.44	40.81
KRH50128	Soybean	nucleus	40.31	40.2
KRH20373	Soybean	nucleus	40.59	40.2
GSMUA_Achr7P25330_001	Banana	nucleus	40.59	39.48
PGSC0003DMT400081282	Potato	nucleus	41.73	39.44
KRH21341	Soybean	nucleus	40.88	39.27
Solyc02g077560.2.1	Tomato	nucleus	41.3	39.09
VIT_10s0003g00420.t01	Wine grape	nucleus	42.57	38.64
GSMUA_Achr3P31350_001	Banana	nucleus	42.01	37.45
TraesCS1A01G156600.1	Wheat	nucleus	26.45	27.18
TraesCS6A01G222300.1	Wheat	nucleus	25.46	26.79
TraesCS7A01G446900.1	Wheat	nucleus	25.18	25.39
TraesCS2A01G567300.1	Wheat	nucleus	17.68	24.27
TraesCS7A01G475700.1	Wheat	nucleus	12.73	24.26
TraesCS7A01G475600.1	Wheat	nucleus	12.73	24.06
TraesCS2A01G380300.1	Wheat	nucleus	9.9	17.33

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF23	SMART:SM01019
SUPFAM:SSF101936	EnsemblPlantsGene:TraesCS1A01G334900	EnsemblPlants:TraesCS1A01G334900.1	TIGR:cd10017	SEG:seg	:

Description

No Description!

Coordinates

chr1A:+:522229894..522234887

Molecular Weight (calculated)

75727.7 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.383

Length

707 amino acids

Sequence
(BLAST)

001: MGIDLNSVEE DGEAAAAAAV GVCGELWHAC AGPGVALPRR GSAVVYLPQA HLAAGGGEAP APAPAPAGAP RVPPHVACRV VGVELCADAA TDEVYARLAL
101: VADAEMFRQN VRESASEEGE DGMAGGDGEK KPRMPHMFCK TLTASDTSTH GGFSVPRRAA EDCFAPLDYK QVRPSQELVA KDLHGTQWRF RHIYRGQPRR
201: HLLTTGWSSF VNKKKLVSGD AVLFLRGDDG ELRLGVRRAV QLRNEALFKA VNSNESKLHT LSAVASSLEN RSIFHVCFDP RSGASEFIVP YWRFSKSLNH
301: SFSIGMRFKD SNESDDANER STGLISGISE VDPIRWPGSK WRCLQVRWDD GNHCNHQRRV SPWEIERVGG SISVTDCLSA SSSKRAKLYF PQGNLDAPVT
401: DGNGYPDSVE TGSFHRVLQG QELLMGSRAH GAARSQSPDV AKFRTPDHQR FSANARSYIP QQSPVEFPYH SSGFGESLRF PEVLQGQEMS QALRFYQGTA
501: FDARAQHGGV VGPFGYAQRS AAPGGLSPAA QGYALGQFTP SAAAAAKVSS PSSVLMFNQA TVPQFDLEGR ASSYRGAYGG QCPPAMEMAR ETEEAWPCAQ
601: RRTPSVTGTG CRRFEEWIKA STPASADGGR ARPAAAGDVV GRSNCRLFGF SLTDQKVLGG AGEGDAKEGD ADDVVAECAD PRVLDLFGRG HPAPGALHAI
701: VAAPLGM

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.