Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G436800.1 | Wheat | nucleus | 97.15 | 97.99 |
| TraesCS7B01G346700.1 | Wheat | nucleus | 97.0 | 97.98 |
| HORVU7Hr1G101270.1 | Barley | nucleus | 95.58 | 96.13 |
| Os06t0685700-01 | Rice | nucleus | 84.74 | 84.86 |
| EER88840 | Sorghum | nucleus | 82.17 | 81.24 |
| Zm00001d014507_P002 | Maize | nucleus | 80.31 | 77.66 |
| Zm00001d000358_P001 | Maize | nucleus | 75.18 | 75.29 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 60.48 | 69.85 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 55.06 | 67.36 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 49.5 | 66.86 |
| GSMUA_Achr11P... | Banana | nucleus | 50.78 | 65.8 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 51.78 | 64.94 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 50.78 | 64.61 |
| GSMUA_Achr11P... | Banana | nucleus | 55.63 | 64.57 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 63.48 | 62.59 |
| VIT_08s0040g01810.t01 | Wine grape | nucleus | 54.92 | 61.8 |
| Solyc09g007810.2.1 | Tomato | nucleus | 61.06 | 61.67 |
| TraesCS1A01G156600.1 | Wheat | nucleus | 60.2 | 61.34 |
| PGSC0003DMT400055522 | Potato | nucleus | 59.91 | 60.69 |
| VIT_13s0019g04380.t01 | Wine grape | nucleus | 58.63 | 60.53 |
| CDY43553 | Canola | nucleus | 51.78 | 59.41 |
| KRH22880 | Soybean | nucleus | 56.78 | 59.4 |
| KRH25023 | Soybean | nucleus | 59.06 | 59.06 |
| KRH26435 | Soybean | nucleus | 58.77 | 58.86 |
| PGSC0003DMT400020874 | Potato | nucleus | 58.49 | 58.66 |
| Solyc11g069500.1.1 | Tomato | nucleus | 58.49 | 58.66 |
| CDX68620 | Canola | nucleus | 51.5 | 58.51 |
| TraesCS6A01G222300.1 | Wheat | nucleus | 56.06 | 58.48 |
| KRH32480 | Soybean | nucleus | 58.06 | 58.14 |
| KRH29907 | Soybean | nucleus | 57.63 | 57.96 |
| Bra011162.1-P | Field mustard | nucleus | 53.21 | 57.65 |
| AT4G30080.1 | Thale cress | nucleus | 54.64 | 57.16 |
| CDY15734 | Canola | nucleus | 54.92 | 56.62 |
| KRG95987 | Soybean | nucleus | 56.49 | 56.57 |
| CDY04557 | Canola | nucleus | 55.21 | 56.5 |
| Bra011955.1-P | Field mustard | nucleus | 56.06 | 55.74 |
| AT2G28350.1 | Thale cress | nucleus | 54.35 | 54.98 |
| PGSC0003DMT400062489 | Potato | nucleus | 52.78 | 54.73 |
| KRG91907 | Soybean | nucleus | 46.22 | 54.64 |
| Solyc06g075150.2.1 | Tomato | nucleus | 51.93 | 54.25 |
| KRH34867 | Soybean | nucleus | 47.22 | 54.09 |
| Bra024109.1-P | Field mustard | nucleus | 50.07 | 50.58 |
| TraesCS2A01G380300.1 | Wheat | nucleus | 27.67 | 48.02 |
| Solyc10g086130.1.1 | Tomato | nucleus | 42.65 | 47.39 |
| CDY46728 | Canola | nucleus | 53.64 | 44.55 |
| CDY30172 | Canola | nucleus | 50.36 | 42.53 |
| TraesCS2A01G567300.1 | Wheat | nucleus | 28.53 | 38.84 |
| TraesCS7A01G475700.1 | Wheat | nucleus | 14.69 | 27.76 |
| TraesCS7A01G475600.1 | Wheat | nucleus | 14.69 | 27.54 |
| TraesCS3A01G246000.1 | Wheat | nucleus | 25.11 | 26.43 |
| TraesCS3A01G292400.1 | Wheat | nucleus | 24.25 | 26.03 |
| TraesCS1A01G334900.1 | Wheat | nucleus | 25.39 | 25.18 |
| TraesCS1A01G396400.1 | Wheat | nucleus | 25.54 | 24.35 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:Auxin_resp | InterPro:B3_DNA-bd |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009987 |
| InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 |
| PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF27 | SMART:SM01019 | SUPFAM:SSF101936 |
| EnsemblPlantsGene:TraesCS7A01G446900 | EnsemblPlants:TraesCS7A01G446900.1 | TIGR:cd10017 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7A:-:641578371..641581354
Molecular Weight (calculated)
75796.2 Da
IEP (calculated)
8.012
GRAVY (calculated)
-0.328
Length
701 amino acids
Sequence
(BLAST)
(BLAST)
001: MITFVDSAAG ERERGDGPRC LDPQLWHACA GGMVQMPPPG SRVYYFPQGH AEHAQGQAGA VDFPPGARLQ ALVLCRVAAV RFMADPDTDE VFAKIRLVPA
101: RSQDAADADD AIAAAAAAQE DKPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAD PPVQTVLAKD VHGVVWKFRH IYRGTPRRHL LTTGWSSFVN
201: QKKLVAGDSI VFMRTENGDL CVGIRRAKKG RIGGPELLPP PSPAAGGNYG GFSMFLRGEE DGGGNKMMGA RGKARVRVRP EEVAEAANLA ASGQPFDVLY
301: YPRASTPEFC VRAAAVRAAM RTQWCPGMRF KMAFETEDSS RISWFMGTVS AVQVADPIRW PNSPWRLLQV TWDEPDLLQN VKRVSPWLVE LVSNMPAIHL
401: APFSPPRKKL CVPFYPDLPA DGQFPAPMFH GNPLGRRGGV GPMCYFPDGT PAGIQGARHA QFGIPLSDLH LNKLQSSLSP HGLHQVDHGG QPPRIAAGLI
501: IGHPAARDDI SCMLTIGSHQ NNNNNKSDVK KASPQLMLFG KPILTEQQIT LGNSGGFSPS AARKSSSEMS AEKSANNSDL PSPQSNQNGT TKNLSCGGVP
601: LCQDNKVLDL GLDIGHCKIF MQSEDVGRTL DLTAVGSYEE LYRRLSDMFG MEKAELMSHV FYRDAAGALK HTGDEPFSDF TKTARRLTIL TDTSGDSSVA
701: S
101: RSQDAADADD AIAAAAAAQE DKPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAD PPVQTVLAKD VHGVVWKFRH IYRGTPRRHL LTTGWSSFVN
201: QKKLVAGDSI VFMRTENGDL CVGIRRAKKG RIGGPELLPP PSPAAGGNYG GFSMFLRGEE DGGGNKMMGA RGKARVRVRP EEVAEAANLA ASGQPFDVLY
301: YPRASTPEFC VRAAAVRAAM RTQWCPGMRF KMAFETEDSS RISWFMGTVS AVQVADPIRW PNSPWRLLQV TWDEPDLLQN VKRVSPWLVE LVSNMPAIHL
401: APFSPPRKKL CVPFYPDLPA DGQFPAPMFH GNPLGRRGGV GPMCYFPDGT PAGIQGARHA QFGIPLSDLH LNKLQSSLSP HGLHQVDHGG QPPRIAAGLI
501: IGHPAARDDI SCMLTIGSHQ NNNNNKSDVK KASPQLMLFG KPILTEQQIT LGNSGGFSPS AARKSSSEMS AEKSANNSDL PSPQSNQNGT TKNLSCGGVP
601: LCQDNKVLDL GLDIGHCKIF MQSEDVGRTL DLTAVGSYEE LYRRLSDMFG MEKAELMSHV FYRDAAGALK HTGDEPFSDF TKTARRLTIL TDTSGDSSVA
701: S
001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
Arabidopsis Description
ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.